Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0942 ATGGCGACGGCTGGTGGTGGCGGTGGTGGTGGCTGCGTGGCCGTAATGGCAGGCAGTTGTACTGTCTCCACTCCGTCGTCGAGTTACGGAGGCGGCGCGTGTTCTTCCAATTCCAAAGACACTCTCATCGAATCGCCGATTTTGATATTCTGTTTATTCCACAAAGCTATTAGCTCGGAGCTCCAGTCCCTCCACGCAACCGCCTTCGATTTCGTTTCCAACCGCCGCCATTCACAACCACACTCTCCCCTCAAAATCATGTCCTTCTCCCATCGCTGCCACTTCCTTCGCACTCTCTACAAGCACCACTGCAATGCTGAGGACCAGGTCATATTTCCTGCCTTAGATAAACGAGTGAAGAATGTTGCACACACCTATTTTTTGGAACATGAGGGAGAGGGTCTTCTTTTTGATCAATTGTTTAAGTTGCCAAATTCCAATTTGCTAAATGAAGAGAGCTATGGAAGAGAATTAGCTTCTTGCATTGGAGCCCTTCGAACATCAATTTGCCAGCATATGTTTAAGGAAAAGGAACAGGTCTTCCCTTTGGTTATTGAGAAATTTTCATCTGAAGAGCAGGGGTCATTGGTATGGCAATTTCTTTGTAGCATACCGGTCAAAATGATGGCAGAATTTCTTCCCTGGCTTGCTTCATATATATCATCTGATGAGTATCAAGGTCTGCTTAGTTGCTTGTGCACAATAATTCCCAAAGAGAAGCTTCTTCATCAGGTCATCTTTGGATGGATGGAAGGACTAAAGATAAAACATAGAAAGTGCACGCATGATACCAAGGTTCAATGGAAGGATGTTGGTATGAGCAACTTACTCAGTCATAATGAAAAGGTGTATTCTATTTGTGGATCTTCCAAAACTGTCAAAAGGAAAAGGGTGGGGCTAAATGAAGATCCTACTAATTCAAATATATCATGCCCTTTAGATGAATTGTTACTTTGGCACAAGGCTATAAAGCAAGAATTGAGTGATTTAGCTGAGACAGCTAGAAAGATACAGCTATCTGAAGAATTTTCTAATTTGTCATCATTTAGTGGGAGGCTGCAATTTATAACTGAAGTCTGCATCTTCCATAGCATTGCTGAGGACAGAGTAATATTCCCTGCTATAAAAGCAGAGCTGCATTTTCTCCAAGACCACACAGATGAAGAACTCCAATTTGACAAGCTTAGGTGTCTGATAGATAGTATCCAAAGTGCTGGAGCTGACTCATCATCTGCTGAATTTTATTTTAAGTTGAGCTCCCATACCGAACAAATCACAGATACTATATTGAAGCACTTTGAAGACGAGGAAGCTCAGGTTCTTCCACTGGCACGAAAATTATTTAGTCCCCAAAGGCAACGAGAATTACTTTATGAAAGCTTGTGCTCAATGCCCTTGAAATTGATTGAGTGCGTGTTACCATGGCTGGTTGGATCACTTAATCAAACTGAAGTTAGATCATTTCTTCAGAATATGTATATGGCAGCCCCAGCTACGGATCATGCATTGGTTACCCTTTTCTCTGGTTGGGCATGCAATGGATATTCTAGGAACAGTTGCTTCTATTCAAGCACAACAGGTTTATGTCCTGATAGGAGATTGATGGAAATACCATTTTGCATGTGTGAACCTTCATTCGGTCTCAATGAAAAATCTTCAGCCATTCAACAAGAAGATGAAAATGGCTGTATTGGACCAGTCAAGCATGGAAAGCCTGAATCAAAGCAAGACAATGATGTTGCTAACCTGATGGTAACTGGAAAAACCCTCAGCTCATCTCTTAATCAGTCTTGCTGTGTCCCTGAATTAAGGGTGAATGCAAGTAATCTAGGGCTTGGTTCTTTGGCCTTAACAAAGTCTCTGCGAGAACTATCTGATTACCCATCTGCACCTTCCCTCAATTCCAGTCTTTTTATGTGGGAAACCAATTTAGTCTCGGCTGACAATCAATGCATTACACGGCCTATTGATAACATATTTAAATTTCACAAAGCCATACGGAAAGACTTGGAGTATTTAGATGTTGAATCTGTAAAACTCAATGATTGTGATGAAATTTTCATTCAGCAATTCACTGGTAGATTTTGCTTGTTGTGGGGTTTGTATAGAGCTCATAGTAACGCTGAGGATGATATAGTATTTCCAGCATTAGAATCAAAAGATAATCTTCACAATGTGAGCCATTCTTACACTTTGGATCACCAGCAGGAAGAGAAGTTGTTTTTAGATATCTCTTCTGGACTCACTCAGCTTACTCAATTACATGAATTGCTATATAAAAAGAATTGGTCTGATCATATAACTAATTGTTTCTCTAATTATGCTGGTTGCTATGATATTGATACTGTACAAAATTACAACGAGCTCTCTACAAAGATTCAGGGCATGTGCAAATCTATCAGAGTGACACTAGATCAACATATTCTCAGGGAGGAACTTGAGTTATGGCCATTGTTTGATAGACACTTTTCTCTGGAAGAACAGGATAAAATTGTTGGTCATATAATTGGTACTACAGGGGCAGAGGTTCTCCAGTCAATGCTGCCATGGGTAACTTCTGCTCTCGCACAAGACGAGCAAAACAAAATGATAGATACATTGAAACAGGCTACCAAAAACACTATGTTCTGTGAGTGGCTTAATGAATGGTGGAAAGGACCTGCTTCATCTTTAAATATCACTACACCAGGAGATTACTCACTAGGTACTGATGCATATGAAGATTCAGAGCATAGCTTTCTTGCATTCCGACCTGGATGGAAAGATATATTCAGGATGAACCAGAATGAACTTGAATCAGAAATAAGAAAAGTTTCTCAAGATTCAACTCTTGATCCAAGAAGAAAAGCATATCTTATTCAAAATCTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTCGTCTCAATCATTGGGAGTTGAATCTTCAAAAGGAGATATATTGGAAACTTCACTTTCGTTTCATGATCCAGAGAAAAAAATATTTGGATGTGAGCATTACAAAAGAAATTGTAAACTCCGTGCTGCTTGCTGTGGAAAACTATTCACGTGTCAGTTCTGTCACGACAAAGTTAGTGACCATTTGATGGATAGGAAGGCTACAACTGAGATGATGTGCATGCAGTGCCAGAAAATACAGCCTGCTGGACCAGTTTGTGCAACACCTTCCTGTGGCAGTCTCTTGATGGCAAAGTACTACTGTAGTATTTGCAAACTTTTTGATGATGAAAGGACTGTTTATCATTGCCCTTTCTGCAATCTATGCCGTCTGGGAAAGGGACTTGGTGTTGACTTCTTTCACTGCATGCAGTGTAATTGTTGCATGTCAAAGAAATTGGTTGATCACATATGCCGGGAAAAGGGTTTAGAAACAAACTGCCCCATCTGCTGTGATTTTTTGTTCACATCCAGTGAATCTGTCAGAGCTCTCCCTTGTGGACATTTCATGCATTCTGCTTGTTTTCAGGCATACACATGTAGCCACTACATCTGTCCAATTTGTAGCAAATCTATGGGAGATATGTCGGTTTACTTTGGCATGCTTGATGCTCTACTGGCTTCTGAGGAACTCCCAGAAGAATATCGGAATCAATGTCAGGATATACTTTGCAATGACTGCCATGAGAAGGGTACTGCACCATTTCATTGGCTATACCACAAGTGTGGGTTTTGCGGATCTTACAACACAAGGAACGAAAACAATTAA 3708 0.4072 MATAGGGGGGGCVAVMAGSCTVSTPSSSYGGGACSSNSKDTLIESPILIFCLFHKAISSELQSLHATAFDFVSNRRHSQPHSPLKIMSFSHRCHFLRTLYKHHCNAEDQVIFPALDKRVKNVAHTYFLEHEGEGLLFDQLFKLPNSNLLNEESYGRELASCIGALRTSICQHMFKEKEQVFPLVIEKFSSEEQGSLVWQFLCSIPVKMMAEFLPWLASYISSDEYQGLLSCLCTIIPKEKLLHQVIFGWMEGLKIKHRKCTHDTKVQWKDVGMSNLLSHNEKVYSICGSSKTVKRKRVGLNEDPTNSNISCPLDELLLWHKAIKQELSDLAETARKIQLSEEFSNLSSFSGRLQFITEVCIFHSIAEDRVIFPAIKAELHFLQDHTDEELQFDKLRCLIDSIQSAGADSSSAEFYFKLSSHTEQITDTILKHFEDEEAQVLPLARKLFSPQRQRELLYESLCSMPLKLIECVLPWLVGSLNQTEVRSFLQNMYMAAPATDHALVTLFSGWACNGYSRNSCFYSSTTGLCPDRRLMEIPFCMCEPSFGLNEKSSAIQQEDENGCIGPVKHGKPESKQDNDVANLMVTGKTLSSSLNQSCCVPELRVNASNLGLGSLALTKSLRELSDYPSAPSLNSSLFMWETNLVSADNQCITRPIDNIFKFHKAIRKDLEYLDVESVKLNDCDEIFIQQFTGRFCLLWGLYRAHSNAEDDIVFPALESKDNLHNVSHSYTLDHQQEEKLFLDISSGLTQLTQLHELLYKKNWSDHITNCFSNYAGCYDIDTVQNYNELSTKIQGMCKSIRVTLDQHILREELELWPLFDRHFSLEEQDKIVGHIIGTTGAEVLQSMLPWVTSALAQDEQNKMIDTLKQATKNTMFCEWLNEWWKGPASSLNITTPGDYSLGTDAYEDSEHSFLAFRPGWKDIFRMNQNELESEIRKVSQDSTLDPRRKAYLIQNLMTSRWIASQQKSSQSLGVESSKGDILETSLSFHDPEKKIFGCEHYKRNCKLRAACCGKLFTCQFCHDKVSDHLMDRKATTEMMCMQCQKIQPAGPVCATPSCGSLLMAKYYCSICKLFDDERTVYHCPFCNLCRLGKGLGVDFFHCMQCNCCMSKKLVDHICREKGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSMGDMSVYFGMLDALLASEELPEEYRNQCQDILCNDCHEKGTAPFHWLYHKCGFCGSYNTRNENN* 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0942 1235 Pfam Zinc-ribbon 1174 1231 IPR039512 -
Gso9g0942 1235 Pfam CHY zinc finger 998 1073 IPR008913 GO:0008270
Gso9g0942 1235 ProSiteProfiles Zinc finger CTCHY-type profile. 1063 1126 IPR017921 -
Gso9g0942 1235 Pfam Hemerythrin HHE cation binding domain 54 184 IPR012312 -
Gso9g0942 1235 Pfam Hemerythrin HHE cation binding domain 312 444 IPR012312 -
Gso9g0942 1235 Pfam Hemerythrin HHE cation binding domain 655 818 IPR012312 -
Gso9g0942 1235 ProSiteProfiles Zinc finger CHY-type profile. 991 1060 IPR008913 GO:0008270
Gso9g0942 1235 SMART ring_2 1127 1168 IPR001841 -
Gso9g0942 1235 CDD Hr-like 659 817 - -
Gso9g0942 1235 CDD Hr-like 52 182 - -
Gso9g0942 1235 Gene3D nmb1532 protein domain like 652 878 - -
Gso9g0942 1235 ProSiteProfiles Zinc finger RING-type profile. 1127 1169 IPR001841 -
Gso9g0942 1235 CDD RING-H2_Pirh2 1126 1169 - -
Gso9g0942 1235 SUPERFAMILY Zinc hairpin stack 1064 1119 IPR037275 -
Gso9g0942 1235 Pfam Ring finger domain 1126 1168 IPR001841 -
Gso9g0942 1235 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 39 1231 - -
Gso9g0942 1235 SUPERFAMILY RING/U-box 1126 1175 - -
Gso9g0942 1235 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 39 1231 - -
Gso9g0942 1235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1122 1171 IPR013083 -
Gso9g0942 1235 SUPERFAMILY CHY zinc finger-like 990 1054 IPR037274 GO:0008270
Gso9g0942 1235 Gene3D - 1197 1235 - -
Gso9g0942 1235 Gene3D nmb1532 protein domain like 45 202 - -
Gso9g0942 1235 Gene3D nmb1532 protein domain like 316 459 - -
Gso9g0942 1235 CDD Hr-like 314 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0942 Gso-Chr9 23692680 23704574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0942 3 1231 C2H2 Transcription Factor Family AT3G18290 58.725 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0942 K16276 - gmx:100783072 2534.21