Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0941 ATGACTTCCGCATGCAATAAGAATCCCAAGCCCATTGCGGTTCGTTTCTTTAAAAACATCTTCAGAGCAAGTCTTGCACATGGATTACTTAAGCTCCCAACAATTTTCACTAAAAAATACGGAGATGGAATGTCAAACCCTGTGTCTCTAAAGTCCCCAGATAGTACTAGATGGAAAATATATTGGACCAAGCATGATGGTGAGATTTGGTTTCAAAAGGGTTGGAAGGAGTATGCCACATACTATGGTCTAGATCATGGTCACCTGCTGTTCTTTGAATATGAGGGAACTTCTCATTTTAATGTGCACATATTCGACACCAGTGCCGTTGAAATAGACTATCCTTCCAATGGTACTCATCATGGAAAGGACAGCAGCCATGTCGAGATTAGCGACGATCCTGTTGAAATTTTGGATGAGAAATTTTCATGCCAAAAGACTAGAGAGAAATCCACAGTGTCTTCTCCTCAACCTACCAAGAAAATGAAGGCTGGACTAACTACAAATGTTAAAAAAAGGCCCAATGTGGTGAACTTGCATCGGCATGTCCAAATTAGAAGCATTAAATCTCAAAAGGCAAAATTTGTCAAGCATGAATTAGATGAAGATGAAAGTAGAGGCATTTTTCACACTGAACGGCCAAAAGGGGAGCAATTAACTTCTACAGCTTTAAACAGAGCCACAGCTTTCAGATCTGAAAATCCCTCTTTCAAGCTTGTCATGAATCCATCCTTTATTTATGGAGACTACCTGGAAATACCACCTGAATTTGCAGAAATATATTTGAAGAAGACACATGCAGTTGTCATCCTTGAGGTCTTGGAAGGGAGAACATGGCCTGTTATTTGTTCTGCTCCTACAATTACTGGGGGATGGCACAAATTTGCATCTGAAAATCATTTGAATGTGGGGGACGTTTGTGTTTTTGAACTGATCCAGAAGATCCAGGGCCTTGCCTTCAAGGTTTCCATCTTTCGAGGTGCAGAAGAACCAAGTTGCCCCATTTCACAAGCAAGTGCCGATGGATTCTGTGAGGAAGTATTTTGTAAAGATGAACTGGAATGTGGTGATGTTACAGTTTAG 1083 0.4072 MTSACNKNPKPIAVRFFKNIFRASLAHGLLKLPTIFTKKYGDGMSNPVSLKSPDSTRWKIYWTKHDGEIWFQKGWKEYATYYGLDHGHLLFFEYEGTSHFNVHIFDTSAVEIDYPSNGTHHGKDSSHVEISDDPVEILDEKFSCQKTREKSTVSSPQPTKKMKAGLTTNVKKRPNVVNLHRHVQIRSIKSQKAKFVKHELDEDESRGIFHTERPKGEQLTSTALNRATAFRSENPSFKLVMNPSFIYGDYLEIPPEFAEIYLKKTHAVVILEVLEGRTWPVICSAPTITGGWHKFASENHLNVGDVCVFELIQKIQGLAFKVSIFRGAEEPSCPISQASADGFCEEVFCKDELECGDVTV* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0941 360 SUPERFAMILY DNA-binding pseudobarrel domain 230 326 IPR015300 -
Gso9g0941 360 CDD B3_DNA 235 326 IPR003340 GO:0003677
Gso9g0941 360 ProSiteProfiles B3 DNA-binding domain profile. 236 328 IPR003340 GO:0003677
Gso9g0941 360 PANTHER B3 DOMAIN-CONTAINING 11 326 - -
Gso9g0941 360 Gene3D - 11 109 IPR015300 -
Gso9g0941 360 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Gso9g0941 360 SUPERFAMILY DNA-binding pseudobarrel domain 15 108 IPR015300 -
Gso9g0941 360 CDD B3_DNA 15 106 IPR003340 GO:0003677
Gso9g0941 360 Gene3D - 217 329 IPR015300 -
Gso9g0941 360 SMART B3_2 237 328 IPR003340 GO:0003677
Gso9g0941 360 SMART B3_2 16 108 IPR003340 GO:0003677
Gso9g0941 360 Pfam B3 DNA binding domain 237 327 IPR003340 GO:0003677
Gso9g0941 360 Pfam B3 DNA binding domain 23 107 IPR003340 GO:0003677
Gso9g0941 360 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0941 Gso-Chr9 23655589 23658512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0941 9 326 B3 DNA Binding Superfamily AT3G18990 30.725 5.10e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso9g0941 B3 7.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0941 - - gmx:100815331 748.814