Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0930 ATGAGTTCTGGTTCAGTCACCAAAGCACCACCACCCTCTTCTTCTTCATCACCCAACTCTTCCTCTGAGTCCCTTGATGGCTTGAAGTTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGCAGCAACAACAACAACTCAAGGGGCCTACAAAACAAGTCGTGTGGTTTCTTCCCCTTCTTCTGCTTCAAAGAAGGGAAGGGGTGGTTCTTTGCAAGCTCCTAGGTGTCAGGTTGAGGGCTGCAAAGTAGATCTGAGTGGTGCTAAGGCTTACTATTCTAGGCACAAAGTTTGTACCATGCACTCCAAGTTCCCTACTGTTATTGTTGCTGGTTTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAATTTGATGAAGGAAAACGAAGCTGCCGCAGGCGACTTGCTGGTCATAATGAGCGCCGACGAAAGCCCCCGCCAAGCTCCACACTAGCCTCTCACTATGGCAGACTCTCTGCGCCTATTTTTGATAACAGTGGCCGAGCCGGTGGCTTTCTGATGGAATTTGCTTCATACCCAAAGGTTACATTGCGAAATACACTGCCAACACAAAGATCAGCCGAGCCGGCTCTCGGTAACCATGCTGCAACACTTACCTGGCAAGGAAGCTCAGACACACCATCTGAATTTTTCCTGCAAGAATCAGGGAGTGGTGGAACAAGCTTCCTTGGTTCCAAACATCCCTTACTGGAAAGTTACACTGGAGTGACTGACTCAAATTGTGCTCTCTCTCTTCTGTCAAGACAAACCTGGGGTTCCAGAAACACAGCCCCAGCAACAAGTGTTGAGCTGAACAACAACTTGTTGAATTTCAATGGGACATCCATGACACAATTTTCCGCGGCTTCTTCACAAGCTGCAGCCATCCATCAACTTCCAAATGCCACCTCATGGTTGTACCTAAAGGGAGTTGGTTCTGGTGATTGTTCGCCTGAGGGTGTCCCCGATCTTGGTCTAGGTCAAATTTCGCCGCCTCTTGATAGCCATCTTCATGGTGAGCTTAATGTGTCACAGCAGGGCAGGAGGCATTACATGGATCTAGGGGAATCCAGGGCATGTGAGTCTTCTCACTGGTCTCTTTGA 1122 0.4848 MSSGSVTKAPPPSSSSSPNSSSESLDGLKFGQKIYFEDVSVAATTTTQGAYKTSRVVSSPSSASKKGRGGSLQAPRCQVEGCKVDLSGAKAYYSRHKVCTMHSKFPTVIVAGLEQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNERRRKPPPSSTLASHYGRLSAPIFDNSGRAGGFLMEFASYPKVTLRNTLPTQRSAEPALGNHAATLTWQGSSDTPSEFFLQESGSGGTSFLGSKHPLLESYTGVTDSNCALSLLSRQTWGSRNTAPATSVELNNNLLNFNGTSMTQFSAASSQAAAIHQLPNATSWLYLKGVGSGDCSPEGVPDLGLGQISPPLDSHLHGELNVSQQGRRHYMDLGESRACESSHWSL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0930 373 SUPERFAMILY SBT domain 75 155 IPR036893 GO:0003677|GO:0005634
Gso9g0930 373 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677
Gso9g0930 373 MobiDBLite consensus disorder prediction 1 25 - -
Gso9g0930 373 MobiDBLite consensus disorder prediction 50 72 - -
Gso9g0930 373 Gene3D - 68 138 IPR036893 GO:0003677|GO:0005634
Gso9g0930 373 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 373 IPR044817 GO:0003677
Gso9g0930 373 MobiDBLite consensus disorder prediction 50 68 - -
Gso9g0930 373 Pfam SBP domain 77 150 IPR004333 GO:0003677
Gso9g0930 373 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 1 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0930 Gso-Chr9 22357665 22362723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0930 28 373 SBP-box Gene Family AT2G42200 41.555 6.24e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso9g0930 SBP 5.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0930 - - gmx:100789301 703.36