Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0919 ATGGCGTCCAAAGGTCCCAGGTCCAGGATTGATCACGAGAGCAGAGCCAAACGGCAGAAGGCTCTTGAAGCTCCAAGGGAGCCTCGGCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTTTGGCTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAAAAAGTAGCTTTAAGAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAAAAGATGAAGGAAGAGGAGCAGCGGTTAAGAAAGGTTGCACTTAATATTTCTAAGGATGTCAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTCGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTATTAGGGCAAACTGAGAGGTACTCAACAATGTTGGCTGAAAATCTTGGGGATCCTTATAAATCAGCAGAGAATAATTCTGCAGAGCACCGCAAGAGTATTCATTGCAAAGATGTACATGATGTTATTAATGAACCTAAGGAAGCTGATGTTGTGGAGTATCAATCAGATGCAGCTGACAATGATGAAGAGTATGATGTGCAATCTGATGATGAATTGGAGGATGATGAGCGAACAATTGAGCAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCTGCTTTGCGTGATGAAATGGATCTTCCGATTCAGGAGTTACTTAAACGTTATGCTGGGGAGAAAGGAGAATCGGTAATGAAAGGAAGTAGTCCAGAGCATAGTGAAGATGGTGGGAAAATAGTTAGAGCTGGTGATGAAAACAGAGATGATCTTTTATCTGTCAGCAAAGTTGACACAAGCAACTCCAGCATGGTCTCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTACACCAACAAACAATCTATCTCAATGTGAGGATGGTCAATCTGAAAATCTAAAAGAGACTCCCAGTGAGACAGCCAATGAAGATTTTGCATATGATTTTACCGATGAAGAGGAAGATGGTGACTTTTTGCTTGTCACAGAAGATAAGGATGATGAAACAACCTTATCTGAGGAGGAAAAAATGGAAAGAGTTGATACAATTGATCCCAAGGATGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTCGAGGAACTGCTTGCAAGATATAAAAGGGACCCAAGTGACGATGAAGATGGGGAATATGAATCTGATTATGCTTCTGCTTTATCAGAGAAACATTCGGATTCTCCAGTCCATCAAGATGCTGGGCAGAAGGATCCTGCCATTCCTATGGATGAAGATATCAAGTCTGGTGAGCACCTGGCTGCCACCATACAGTTCCAGGAAGAACAGAGGGAATCACCTCGTGAAAATTTGGAAAAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCCACCGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTCAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACTATTTCTTTGCTTGCACATCTTGCTTGTGATAAAGGGATTTGGGGCCCACATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCTAACTCCTTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGACGAATTCTCTTGACTGGTACGCCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGATGGAGAAGAAAAAATTAATAAGGAGGTTGTTGATCGCCTTCATAATGTACTTCGTCCATTCTTACTCCGTCGACTTAAGCGAGATGTGGAGAAGCAACTTCCAATGAAGCACGAACATGTCATATACTGTAGACTATCAAAGAGGCAACGGAATTTGTATGAAGATTTCATTGCTAGTTCAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCCGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGTGGTATTGATATTCAGTTAAGTTCTTCTGTTTGCTCCATACTTTTGCCTAGTCCCTTTTCAACAGTGGACCTAAGAGGTTTGGGTCTTTTATTCACTCATCTTGACAGCATGGCTGCTTGGGAAAGTGATGAAGTACAAACTATTGAGACCCCTGCGACTTTAATCATGGAACGTACTGATATGACCGAACTAGAAGTAATTCGGCCACAGAAATGTCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGAAATCCAACGGGCAATCTGGGAAGAGAGGCTAAAAGAGGCCAAGGAACGTGCAGCAGCTATTGCATGGTGGAATTCCTTGAGATGTAAAAGAAGACCCATCTACTCGACAACTCTAAGGGATCTTGTTACCTTAAGACATCCTGTATATGATATTCATCAGGTTAAAGCAGACCCTGTTTCATACTTGTACTCATCAAAGCTAGCTGACATTGTTCTCTCCCCGGTTGAACGATTTCAGAAGATGACTGATGTGGTTGAGAGCTTCATGTTTTCAATTCCAGCTGCTCGGGCACCCTCTCCTGTTTGCTGGTGCAGTACAAGTGAGACAAATGTGTTTCTGCACCCATCTTACAAGCAGAAATGCTCTGAAGTTCTGTTACCGCTACTAGCACCAATCAGGCCTGCAATTGTCCGCCGGCAAGTGTATTTCCCCGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTAGCAATTTTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGGTATACATACATGCGCTTAGATGGATCAACCCAGCCGGAGGAGAGACAGACCTTAATGCAGCGCTTTAACACAAATCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGGGTTATAATACCGAGTTCTTCAAGAAGCTCGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATAAAAAATATTGTGAAGGAAAAAGACCAGAACAATGGGGAAGTTTCTGTAACTAATGATGATGTTGAGGCTGCATTAAAATGTGTAGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAATCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAGGATGATGACACTGCAGAATTAGGTGAATCTGTTTCGAATTTAAATAAAGAGAATGTGTTAATGTTAAACGGAACTGATCATAAGGAAGATAGACCGACACACTCTGTTCCTGTCAAAGAAGATGATCCTGACATGTTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAGAATGAGCTACGCCCTATTGATCAATATGCCATTCGTTTCCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCCGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTATGCAACTACGGCATATCGACAGCATGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTCGAATATGAAGCTAGGCAGAAAGAAGCTGAGGAAGAAACCTGTGATTCTAAAAAGACTCCAACACCAGGAGATTCGAAGCCCAAATCTAAAAAGAAACCCAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGTTCTTTAACCTCTGGCTTGAGACCTGTGAAAGAAGAGTCACAAGCACAGCCTATGAACATAGATGATGAGAATGTCCCTGGTCTAGATTTTCAGTCTCCAAATTCAACCATGCAGAAAAAACGTAAGAAATCTAAATTAACAACTGATGGTGAAGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATTCTCCTGACATTTATGCTTCCGATTTGGAATCCAACTCATTAGTTGTGCAGGATGAACATGCAGAATCAAAGACTTGTGAAAGTCTGGTTGATTTAGAACAGAAAACAGCAAGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCTATCCCTTTAAAACAGGTCTGGATGATAAAACCAGAAAAATTGAAAAAGGGAAATCATTGGTCCAAAGATTGTATTCCACCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGTGAAACACTTTATGGCATGAGTGGTGGTGGGTCATACAGGGGAAGATATCGTCATCCTGTCCAATGCTGTGAGAGGTTCAGAGAACTATTCCAAAAGTATGTCTTGCTGTCAATGGACAATGCAAATCATGAGAAGATCAACAGTCCGGGCTCTGGAAAGGCTCTGCTTAAAGTTACAGAGGATAACATTCGGATGCTGTTAGATGTTGCTTCTGAGCAGGTAAATAGGGAGTTACTGCTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGTCTGGAAAGTGGCATCACACGTTGACCACAGGCGAAATCCATCACCCTCCTGTAATGGTCTCTATTTCGATCAGAGTTTCTATACTTCCATTGGCCAGCCTTCACAAAATTCCTTGAAGAAATCCTCTGAAAGGATGGCATTTGCAAATTTGGCCCCGAGCAAGAATTTAGTAGCAGCTGCACTTGATGATATCACAACTAGGCAAGTGAATGACAAAGTCATTCTGTCTAACCAAGGGGAAGACATGCCAGTGAGTGCAGATCAGCTGGATATAACACTGGAGTTTGCAAAAGAGGATAGCGACGTCCTATCTTCATTTCCATCTGTTATAAATTTATCAATACATGGGACTGAACCAACACCATCTTTAAATAAGCTAACAGGAGAAGATGATCTTAAAGTTGGTTTGTTCATTGCTGAGAATCGTTTCAGGGAGGCTGCAAGAGTTTGTGGAGAAGACAGCTCTGGATGGGCATCATCTGCATTCCCAACCAACGATACAAGGTCTCGACCTGGATCCAGGTTACAATCCTCCGGAAAGCGGAAGTCTTCTGTATCTGACTCTTCTAAGCCTTCTAGGTCAAAGTCCAAAAAAGCTTCAATGGATCGTAGTGAAATGCATCCCTATCAGGCTGACTCAATATTCCAGTCAATGCCATCACTTAAAGATCTGAAAATTGATCTCACTTCATTAACTACTGATGAAGTTGGAATTGATGGTATGGATAGCATTTTCTCCTTTGACTTGAATGGGGAAAGTTCATTGGAAATGGAGAGTGTTGGAATGATCCCACATGATTATGTTGCTGGTTTAATCTCAGACCTTGATGATAGTACAGCATTCCCTGAATATACTGACATTAGATAA 6129 0.4105 MASKGPRSRIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLGDPYKSAENNSAEHRKSIHCKDVHDVINEPKEADVVEYQSDAADNDEEYDVQSDDELEDDERTIEQDEALITKEERQEELAALRDEMDLPIQELLKRYAGEKGESVMKGSSPEHSEDGGKIVRAGDENRDDLLSVSKVDTSNSSMVSGRRCDESNGDVATPTNNLSQCEDGQSENLKETPSETANEDFAYDFTDEEEDGDFLLVTEDKDDETTLSEEEKMERVDTIDPKDEIALLQKESDMPVEELLARYKRDPSDDEDGEYESDYASALSEKHSDSPVHQDAGQKDPAIPMDEDIKSGEHLAATIQFQEEQRESPRENLEKRESEDIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVDGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSVCSILLPSPFSTVDLRGLGLLFTHLDSMAAWESDEVQTIETPATLIMERTDMTELEVIRPQKCQKKLQGTNIFEEIQRAIWEERLKEAKERAAAIAWWNSLRCKRRPIYSTTLRDLVTLRHPVYDIHQVKADPVSYLYSSKLADIVLSPVERFQKMTDVVESFMFSIPAARAPSPVCWCSTSETNVFLHPSYKQKCSEVLLPLLAPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNIVKEKDQNNGEVSVTNDDVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDDTAELGESVSNLNKENVLMLNGTDHKEDRPTHSVPVKEDDPDMLADVKQMAAAAAAAGQAISAFENELRPIDQYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADYATTAYRQHVEALAQHQLMEELEYEARQKEAEEETCDSKKTPTPGDSKPKSKKKPKKAKFKSLKKGSLTSGLRPVKEESQAQPMNIDDENVPGLDFQSPNSTMQKKRKKSKLTTDGEEEKRLKKSKKSKRDSPDIYASDLESNSLVVQDEHAESKTCESLVDLEQKTASRSKMGGKISITPIPLKQVWMIKPEKLKKGNHWSKDCIPPADFWLPQEDAILCAVVHEYGPNWSLVSETLYGMSGGGSYRGRYRHPVQCCERFRELFQKYVLLSMDNANHEKINSPGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSVWKVASHVDHRRNPSPSCNGLYFDQSFYTSIGQPSQNSLKKSSERMAFANLAPSKNLVAAALDDITTRQVNDKVILSNQGEDMPVSADQLDITLEFAKEDSDVLSSFPSVINLSIHGTEPTPSLNKLTGEDDLKVGLFIAENRFREAARVCGEDSSGWASSAFPTNDTRSRPGSRLQSSGKRKSSVSDSSKPSRSKSKKASMDRSEMHPYQADSIFQSMPSLKDLKIDLTSLTTDEVGIDGMDSIFSFDLNGESSLEMESVGMIPHDYVAGLISDLDDSTAFPEYTDIR* 2043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0919 2042 MobiDBLite consensus disorder prediction 1454 1570 - -
Gso9g0919 2042 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 1536 1564 - -
Gso9g0919 2042 Gene3D - 481 757 IPR038718 -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 1454 1477 - -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 250 333 - -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 284 328 - -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 1 33 - -
Gso9g0919 2042 PANTHER HELICASE SRCAP-RELATED 3 1930 - -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 250 283 - -
Gso9g0919 2042 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 524 689 IPR014001 -
Gso9g0919 2042 Coils Coil 1392 1412 - -
Gso9g0919 2042 SUPERFAMILY Homeodomain-like 1638 1695 IPR009057 -
Gso9g0919 2042 ProSiteProfiles Myb-like domain profile. 1640 1693 IPR001005 -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 154 222 - -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 188 214 - -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 415 441 - -
Gso9g0919 2042 SMART bromneu2 23 94 IPR014012 -
Gso9g0919 2042 CDD DEXQc_SRCAP 512 734 - -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 364 406 - -
Gso9g0919 2042 SMART helicmild6 1081 1164 IPR001650 -
Gso9g0919 2042 Pfam Helicase conserved C-terminal domain 1054 1164 IPR001650 -
Gso9g0919 2042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 1222 IPR027417 -
Gso9g0919 2042 Coils Coil 1268 1288 - -
Gso9g0919 2042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 734 IPR027417 -
Gso9g0919 2042 Gene3D - 1016 1271 IPR027417 -
Gso9g0919 2042 CDD SF2_C_SNF 1040 1175 - -
Gso9g0919 2042 SMART ultradead3 508 701 IPR014001 -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 1908 1960 - -
Gso9g0919 2042 Pfam SNF2-related domain 529 801 IPR000330 GO:0005524|GO:0140658
Gso9g0919 2042 PANTHER HELICASE SRCAP 3 1930 - -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 157 187 - -
Gso9g0919 2042 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1055 1205 IPR001650 -
Gso9g0919 2042 Coils Coil 1447 1467 - -
Gso9g0919 2042 Coils Coil 206 235 - -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 354 441 - -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 1940 1959 - -
Gso9g0919 2042 Gene3D - 758 818 - -
Gso9g0919 2042 MobiDBLite consensus disorder prediction 1911 1939 - -
Gso9g0919 2042 Gene3D - 1636 1697 - -
Gso9g0919 2042 Pfam HSA domain 27 93 IPR014012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0919 Gso-Chr9 21395290 21411423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0919 532 804 RAD5 or RAD16-like Gene Family AT5G43530 29.814 7.92e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso9g0919 SNF2_N 8e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0919 - - gmx:100795613 3875.86