Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0909 ATGGGGAAGAAGGCGAAGAAAGCTATGAAGAAGAATTTGAAAAGGGCTTCCTTTAATAAGAATCCATCTGAGGATGCTGATTTCTTGCCCTTGGAAGGTGGCCCTGCTCGTAAGCTCGCCGGCCAGCAGAAGCCGCCGCCGCCGCCGGAGAACACCGCCACGGTTTTGTACGTCGGTCGGATCCCACATGGGTTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATTAAGAGGTTGAGAATCGCAAGAAATAAAAAGTCTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCCGAGGTAGCAAAAATTGTGGCTGATACTATGCATAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTGATACCTCCAGAGCATGTTCATCCAAGAATATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCTGTCCAAATTGAACGGAAGCGTCATGACAAGGATAGAACATTGGAAGAGCACAAGAAGTTGGTGGAGAAGGTTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGGATTGATTATGAATGCCCTGAGATTGTGGGTAACATCCAACCTGCTCCAAAGAAAATAAAGTTTGAAGACTGA 645 0.4388 MGKKAKKAMKKNLKRASFNKNPSEDADFLPLEGGPARKLAGQQKPPPPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVIPPEHVHPRIWRGFNYHYKPLDSVQIERKRHDKDRTLEEHKKLVEKVLKHDQKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFED* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0909 214 MobiDBLite consensus disorder prediction 1 52 - -
Gso9g0909 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Gso9g0909 214 SUPERFAMILY RNA-binding domain, RBD 42 142 IPR035979 GO:0003676
Gso9g0909 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 123 IPR000504 GO:0003723
Gso9g0909 214 SMART rrm1_1 55 128 IPR000504 GO:0003723
Gso9g0909 214 CDD RRM_NIFK_like 55 127 - -
Gso9g0909 214 Gene3D - 4 129 IPR012677 -
Gso9g0909 214 Coils Coil 155 175 - -
Gso9g0909 214 PANTHER - 1 213 - -
Gso9g0909 214 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0909 Gso-Chr9 21136513 21139820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0909 54 127 Eukaryotic Initiation Factors Gene Family AT1G71770 35.135 1.25e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0909 K14838 - gmx:100778780 432.565