Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0894 ATGGAGCTGGCTTTGAGTTTAGGAGACACGTCCAAGTCCTTTACATTTCTCGACAAGGCGGTGACTTTACCCCCCAACAAGGACCCACCTGGGTTCTGCTTGGCGCCGAGTTTCGCCGAGAAAAGAAGCGATTCTGAGAGAGGAACCGCTTCTGGTTCTTCAGATCCACCGGTTCAGCTCGACCTTCTTCCTTTCTCTCCGGTTCTCAGACCCCAACAACATCCTCCCTCTCACCTTCGGATCCCTTGGCTCACCCAAGCATGTGGTGGAGCGGCGAGGGTTCTGGACGTGAACCTATTTCCCGCGGCCACCGCGGAGGATGGCGACGACGGCACGTCGCTGTCGTCGTCGCCGAACAGCGCGGTGTCACCGTTTCAGATGGATTTCTGCACCAGGAACGGTAATGCGGCGGAGTTCGGAAGCAGAAACAAGAGAGAGCAGCAAGAGGCTGAGGGTAGAGCGAGTGATGACGATGAAAATGGCTCCACGAGGAAGAAACTTAGACTCTCCAAAGAACAATCAGCTTTTCTCGAAGAAAGTTTCAAAGAACACACCACTCTCAATCCCAAGCAAAAACTTGCTTTGGCTAAACAGTTGAATCTCCGTCCTCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCCAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACCCTAACAGAAGAGAATAGGAGGTTGCAAAAGGAACTTCAAGAACTCAGAGCCCTAAAATCTTCTCAACCTTTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGCCCCTCTTGTGAAAGGGTAGCCACAAATTCCACCACAACCAACCAAACTTCTATAGTTAACAACAATGCTTCTTCTCAAATCCCAGTGGAATTGTCTCTAAGCAAGCCCAGAATATTGCCCTTCCCTAATGGCCAGGTCCAAGCCCAAGCCCATCAAATAGCCTCTTCATGA 984 0.5051 MELALSLGDTSKSFTFLDKAVTLPPNKDPPGFCLAPSFAEKRSDSERGTASGSSDPPVQLDLLPFSPVLRPQQHPPSHLRIPWLTQACGGAARVLDVNLFPAATAEDGDDGTSLSSSPNSAVSPFQMDFCTRNGNAAEFGSRNKREQQEAEGRASDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKSSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSIVNNNASSQIPVELSLSKPRILPFPNGQVQAQAHQIASS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0894 327 Coils Coil 226 256 - -
Gso9g0894 327 MobiDBLite consensus disorder prediction 142 169 - -
Gso9g0894 327 SMART halz 220 263 IPR003106 GO:0006355|GO:0043565
Gso9g0894 327 ProSitePatterns 'Homeobox' domain signature. 195 218 IPR017970 GO:0000981|GO:0006355
Gso9g0894 327 ProSiteProfiles 'Homeobox' domain profile. 160 220 IPR001356 GO:0003677
Gso9g0894 327 MobiDBLite consensus disorder prediction 109 141 - -
Gso9g0894 327 MobiDBLite consensus disorder prediction 105 169 - -
Gso9g0894 327 SUPERFAMILY Homeodomain-like 161 229 IPR009057 -
Gso9g0894 327 Gene3D - 168 218 - -
Gso9g0894 327 CDD homeodomain 164 221 IPR001356 GO:0003677
Gso9g0894 327 Pfam Homeobox associated leucine zipper 220 254 IPR003106 GO:0006355|GO:0043565
Gso9g0894 327 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 322 - -
Gso9g0894 327 Pfam Homeodomain 164 218 IPR001356 GO:0003677
Gso9g0894 327 SMART HOX_1 162 224 IPR001356 GO:0003677
Gso9g0894 327 PANTHER - 1 322 - -
Gso9g0894 327 MobiDBLite consensus disorder prediction 25 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0894 Gso-Chr9 20540549 20542970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0894 156 314 Homeobox Transcription Factor Family AT4G37790 66.875 5.74e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso9g0894 Homeodomain 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0894 K09338 - gmx:100776113 637.876