Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0876 ATGAGAACTTCATGGGCGGATTCTGCTGACAACTCAACCATTGGTTCTGGCAATAGCAATTCCTCGGCTTGCCCTCCCCGGGGAGCTTATGTGCCGCCGCATCTTCGGAACCGGGTATTCTCGTCCGAGGTTCCTCCGGCAGCGTCACACCCAGTGGCTCCGGGGAATGACCGGGTGAATCATGGTGGTCCAGCTCCTCATCAGGGTAGTGGTTACTTTAAAGCCGATCATGGGCGGCAGCCGCAGCAAGGATTTGGATATGGTTCTGGTTTTCAGAGTGGTGGTGGTGGTGGCTGGAATGGTAGAGGGGCGGGAAGGGACCGTGGGAGGCGCGAGGCGAACCCTTTTGAGAATGTTGAGGCTGAGGATCAATCTTTTAGTGAGCTAGAGAACACAGGGATTAACTTTGATGCATATGATGATATCCCTGTGGAGACAAGCGGGGAGAATGTGCCACCGCCTGTGAATACATTCGCGGAAATAGATTTGGGTGAGGCGTTGAATCAGAATATACAGAGGTGCAAGTATGTGAAACCAACCCCGGTTCAAAGGTATGCCATTCCAATTTCTCTTGCGGGGCGAGACTTGATGGCCTGTGCTCAGACTGGGTCAGGAAAGACAGCTGCATTTTGCTTCCCTATTATAAGTGGAATCATGAGGGAGCAATATGCTCAAAGGCCACGTGTGGCTCGAACTGCTTATCCGCTGGCACTTATCCTCTCCCCTACAAGGGAGCTTTCATGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAAGTTGTGGTTGCTTATGGAGGAGCACCAATCAACCAACAGTTACGGGAGCTTGAGAGAGGCGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATACTTGGCTCTTGATGAGGCAGATCGGATGCTAGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGTTGTTTAGTGCCACATTTCCCAAAGAGATACAGGCTCTTGCCTCGGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCTAGTACTGATCTAATTGCTCAAAGAGTAGAATACGTGCTCGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCACGCTCAGAGGGAAACTGGAGTTAATGGCAAGCAAGGTTTGACATTAGTTTTTGTGGAAACGAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGGTTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCGTTCAAGACTGGAAACACACCAATTCTAGTGGCAACAGATGTTGCAGCGCGTGGTCTTGACATCCCACGGGTAGCACATGTGGTAAATTTTGATCTTCCAAATGACATTGACGATTATGTGCACCGGATAGGAAGAACGGGACGAGCTGGTAAAATGGGATTAGCAACGGCCTTCTTCAACGAAGGTAATTTGAACTTGGCTAAATCATTGGCTGATTTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCAGCCGATATGCAGCAAGGGCTATTTACAGTGGTGGCAACAGAAATAGGAAGTCTGGGGGATCTCGTTTTGGTGGCCGCGATTTTAGGAAAGAGGGTTCGTTTAATAAAGCAACGGATTACTATGGCAGTGGAACTGGTGGTGGATATGGTGGCAATTATGGTGGAGGGTATGGTCAAGGTGTGACAAGTGCTTGGGATTAG 1836 0.4837 MRTSWADSADNSTIGSGNSNSSACPPRGAYVPPHLRNRVFSSEVPPAASHPVAPGNDRVNHGGPAPHQGSGYFKADHGRQPQQGFGYGSGFQSGGGGGWNGRGAGRDRGRREANPFENVEAEDQSFSELENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQALASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRETGVNGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNEGNLNLAKSLADLMQEANQEVPAWLSRYAARAIYSGGNRNRKSGGSRFGGRDFRKEGSFNKATDYYGSGTGGGYGGNYGGGYGQGVTSAWD* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0876 611 CDD DEADc_DDX3_DDX4 157 377 IPR044763 GO:0003724|GO:0005524
Gso9g0876 611 MobiDBLite consensus disorder prediction 1 25 - -
Gso9g0876 611 Pfam DEAD/DEAH box helicase 180 359 IPR011545 GO:0003676|GO:0005524
Gso9g0876 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 549 IPR001650 -
Gso9g0876 611 Pfam Helicase conserved C-terminal domain 395 510 IPR001650 -
Gso9g0876 611 MobiDBLite consensus disorder prediction 104 118 - -
Gso9g0876 611 CDD SF2_C_DEAD 383 519 - -
Gso9g0876 611 SMART helicmild6 429 510 IPR001650 -
Gso9g0876 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Gso9g0876 611 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 40 583 - -
Gso9g0876 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 526 IPR027417 -
Gso9g0876 611 MobiDBLite consensus disorder prediction 1 127 - -
Gso9g0876 611 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 40 583 - -
Gso9g0876 611 SMART ultradead3 175 386 IPR014001 -
Gso9g0876 611 Gene3D - 374 553 IPR027417 -
Gso9g0876 611 Gene3D - 112 373 IPR027417 -
Gso9g0876 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 371 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0876 Gso-Chr9 19003984 19020307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0876 154 542 Eukaryotic Initiation Factors Gene Family AT3G19760 30.591 1.94e-60 205