Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0871 ATGCACCTCCACCTCTTCAAGGCCATGCGAGACGGCATCGCCACCGGCATGGTGCCCTTCCACTTCAACATCGTTGGCGTCAGTGACCCCATCTCCATGGGCACATGTGGCATGTGCTACAGCCTCCCGTCCAAGGACCTCATTGCCAACAACATTGAGACTGTCATGGCAACGCAATGGTACGACAACAACATTTCGATCCCCAACTTCATGTCTCACAAAGAAAACCTCCTATGTGAACTGAATACAGAGAAAGGTACTTGGAAGATAGTGGTGCGAATAACTGATATATGGCGTCTTAACAAGCATAATGGTCGACAATCCATTGAGATGGTGTTGATGGACCATACGGGTACAAAGATTGGGGCAACTCTATGGCAAGAATTGTTCCCTGAATTTGAGCCCAAGTTGCATTGTGGTGGTGCATATGTTATTCAGAACGTGAAGGTTGTTGATACTCATTCTGACTACAAAGTGAGTACAATTAAATATTTGGTTTATTTCGTGAAGACAACCTCTGTGAAAGAGGTAGACAGACCTGAGATTCCTCCTAATGTTCATTCCATTACTTCATTTGCTGATATAATTTCAGGCGTTGCAAAACCTGATACTTTAGTTGATGTTGTGGGTGTTATTGCTGAAGTGATTGAACGCAAAACAGTTAATCCTGTATACAGAGTGACTGTCAAGTTGAGAGACAACAGTCATGTTGAGATCATCATGACCGTGTGGGAGGAATATGCTCTTCAGCTGGATGATACTATTGAGAAAAACCATTTTGTGCAAAAGCCATTGGTTGTTATGCTAACCCTTGCTAAGATCAAAGAACCCAAGGACAAGTATCCCCTCAGTGTACAGAATATAAAGCATGGTTCGAAGTTGTATGTGAATGGTGACATTGTAGAAATCCAACAGTTCCATGATAGTTTACGTGTGCCATTTTATATTGGCGGTCTAGATGATGAGGGTGATGTTTCTCAGTCGCAGTCTACCCAATATTGCCAAAATAAGTTTTTGCATAATGCTCAAATAGTGCAGCCTGCCGTTCGTGCCAGAACCATGTTACTCACACTATTCCAAGCTGAATATGATCCTGGAAATACTGCCCTTGTAACTCCTGCAAAAAGAATGTCCGATCAGCAAGGAAGTAGTCAGTTTGATAGTGACGAGTTCGCCACATATGAACTATCGACCAACAAGCATATAAAAGCTGAGTAA 1218 0.4278 MHLHLFKAMRDGIATGMVPFHFNIVGVSDPISMGTCGMCYSLPSKDLIANNIETVMATQWYDNNISIPNFMSHKENLLCELNTEKGTWKIVVRITDIWRLNKHNGRQSIEMVLMDHTGTKIGATLWQELFPEFEPKLHCGGAYVIQNVKVVDTHSDYKVSTIKYLVYFVKTTSVKEVDRPEIPPNVHSITSFADIISGVAKPDTLVDVVGVIAEVIERKTVNPVYRVTVKLRDNSHVEIIMTVWEEYALQLDDTIEKNHFVQKPLVVMLTLAKIKEPKDKYPLSVQNIKHGSKLYVNGDIVEIQQFHDSLRVPFYIGGLDDEGDVSQSQSTQYCQNKFLHNAQIVQPAVRARTMLLTLFQAEYDPGNTALVTPAKRMSDQQGSSQFDSDEFATYELSTNKHIKAE* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0871 405 SUPERFAMILY Nucleic acid-binding proteins 78 178 IPR012340 -
Gso9g0871 405 PANTHER BNAA01G23200D PROTEIN 3 69 - -
Gso9g0871 405 Gene3D - 181 313 IPR012340 -
Gso9g0871 405 Pfam Dehydratase family 5 69 IPR000581 GO:0016836
Gso9g0871 405 CDD RPA1_DBD_A_like 89 174 - -
Gso9g0871 405 Gene3D - 77 177 IPR012340 -
Gso9g0871 405 CDD RPA1_DBD_B_like 207 306 - -
Gso9g0871 405 SUPERFAMILY IlvD/EDD N-terminal domain-like 13 68 IPR037237 -
Gso9g0871 405 SUPERFAMILY Nucleic acid-binding proteins 188 312 IPR012340 -
Gso9g0871 405 Pfam Domain of unknown function DUF223 110 205 IPR003871 -
Gso9g0871 405 PANTHER DIHYDROXY-ACID DEHYDRATASE DAD 3 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0871 Gso-Chr9 18896467 18901463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0871 78 320 Core DNA Replication Machinery Family AT2G06510 24.806 8.21e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0871 K01687 - gsj:114368235 812.757