Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0870 ATGGTGCTAATGAATGTCGTGGAGGTGCATGATAACAAAGGGCACACATTAGTAATCGTGGTTTGTACAAAATCCCAATCCATTAATCCCTCTCCACTTGCGGTGGAGGTGCAGGGGTGCCTGATGAGTGGCATTTCTGTCCATTTGGGGTATTTTGGGGTGCAGAAAGCAAAAGATGGGTTTAAGGAAGTAATTACCCTCATAGGGAGAAGTTTCTCGAATATAGAAGTGCGGTTACAAATATCAGGAATTCATTTGCGCTTCCGAACAACAAAACAAAGTCCCCCCCCTCTCTCTCTCGGTGTCTGGAACAGAGATTGCGTTTGTTTCGCGAATTGTGAAGCCGCTGGTGAAATAGCACCAAATATGAGGGGAAGAAGCTGCAGTTACAGCCCATCACCTTCACCTCCAAGGCGTTACAGCCGAAGAAGGCACAGCCTTAGCCCTAGGGGCCGATATAGAGGATGTGATAGGGATTTGCCAACAAGTCTTCTGGTTCGAAACCTCAACAGAGATTGCAGGCCAGAAGATCTGCATGGTCCATTTGGCCAATTTGGTCCTCTTAAGGATGTTTACCTGCCTCGAGATTATTATACTGGGGAGCCAAGAGGTTTTGGGTTTGTCCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGACGGTCGAATTCTTCTTGGTCGTGAGATAACTGTAGTGTTTGCTGAAGAAAACAGAAAGAAACCTGCTGAAATGAGAGCAAGAGAACACAGGAGGGATCGATCGCATGATTACAGGCGATCTTCACGAACCTATTCTCCTAGTCCAGACTATTCTCCTTCTCCAAGACGAAGGCGACATTACAGGTCAATCTCACCAAGGGACAGAAAGTATAGGGATCGATCATACTCTAGATCATCTTATGCATCAAGAAGCCGCAGCAGAAGTAGGAGTTACAGTAGGAGTTTGAGCCGAAGTCCGGGCTACTCTAGGTGA 984 0.4665 MVLMNVVEVHDNKGHTLVIVVCTKSQSINPSPLAVEVQGCLMSGISVHLGYFGVQKAKDGFKEVITLIGRSFSNIEVRLQISGIHLRFRTTKQSPPPLSLGVWNRDCVCFANCEAAGEIAPNMRGRSCSYSPSPSPPRRYSRRRHSLSPRGRYRGCDRDLPTSLLVRNLNRDCRPEDLHGPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGRILLGREITVVFAEENRKKPAEMRAREHRRDRSHDYRRSSRTYSPSPDYSPSPRRRRHYRSISPRDRKYRDRSYSRSSYASRSRSRSRSYSRSLSRSPGYSR* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0870 327 Gene3D - 154 269 IPR012677 -
Gso9g0870 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 240 IPR000504 GO:0003723
Gso9g0870 327 MobiDBLite consensus disorder prediction 124 155 - -
Gso9g0870 327 SMART rrm1_1 163 236 IPR000504 GO:0003723
Gso9g0870 327 MobiDBLite consensus disorder prediction 244 327 - -
Gso9g0870 327 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 123 320 - -
Gso9g0870 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 234 IPR000504 GO:0003723
Gso9g0870 327 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 123 320 - -
Gso9g0870 327 SUPERFAMILY RNA-binding domain, RBD 162 266 IPR035979 GO:0003676
Gso9g0870 327 MobiDBLite consensus disorder prediction 303 327 - -
Gso9g0870 327 MobiDBLite consensus disorder prediction 244 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0870 Gso-Chr9 18881333 18884995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0870 108 286 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 1.25e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0870 K12900 - gmx:100816913 246.899