Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0860 ATGTGCGGTGGTCCAGAGAAATCAAAATCTCTTTCAACTTCATCTTCATCAGCGGTAGAAGGTTCATCTAACAGCAAAGACATGAAAAATTTAACAGTTCATACTGAAGATTCTTTTTCCTGCTTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTAAAGCTAGCTTTAGATAGGGATGCTTCTCTAATAAATGAAGTTGGCCTCTGGTATGTCCGCCAGATTGGATCCAAACAAATTGTTCTTCAGCCCCGAACTCCTTTGATGGTTGCTGCTATGTATGGGAGTATAGATGTTCTAAAACTTTTACTCTCTTGTCCAGAGGCTGATGTCAATTTCTCTTGCGGGACAGATAAAAGCACTGCCCTACACTGTGCTGCATTGGGTGGTTCTGTTAATGCAGTCGATGTTGTCAAATTGCTCTTATCAGCTGGTGCTGATGTCAGTTGTGTTGATGCTAATGGAAATCGTCCTGTTGATGTTCTTGTTGTTCCTCCTAAGCTTGAAGGTCTGAAAGCAACTCTTGAAGATCTACTTTCAGATAGTACTTCCGTTGGGTCTGTTGGTGACTGTTTTATTCCAGTATCAGTGAATTCATCATGTTCTGATTCAGCTGCTCATTTATCATCACCTGAAAATGGGTTGCCATTCTCAGCTATGGCATCAAAGTTTGCTGATACAGCTGTTAATTCTGCTTCTGAGAAGAAAGAATATCCAATTGATCCATCACTGCCTGATATAAAGAACAGCATTTATGCGACAGATGAGTTTCGCATGTTTTCATTTAAGGTGCGACCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCCGAAAGTTCCATTACAGCTGTGTGCCTTGCCCTGATTTTAGAAAGGGTGCTTGTAGACGTGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAAGATGGTACTAGTTGCAACAGAAGGGTATGCTTTTTTGCTCACACAGCAGAAGAGCTGCGTCCATTATACGTGTCCACCGGATCTGCTGTTCCCTCGCCTCGCTCATCTGCCTCTACTCCAAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCGTCATCAATTTCTTCCATGTCTCCATCTCCCTTTGCGCAGCCAATGTCTCCATCTACAAGTGGCATTTCTCACTCATCTAATGCTTGGCCGCAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGCCGATTGAGATCTTCTCTTAGTGCTCGTGACATGCCACCAGAAGACTTTGATGTGTTGCAAGATTTTGATGGCCAGCAACACCTTTTGAGTGACTTGGGCTGTTTCTCGCAGCCCCGTCCTGGCGCCATTTCAGTGAGTCGATCTGGTCGGTCTAAGACACTAACCCCATCAAATCTGGATGAACTATTCTCTGCCGAGATTTCTTCATCTCCCCGGTATTCTGACCCAGCAGTGGCTTCTGTATTTTCCCCAAGACACAAATCAACTATTATGAATCAGTTTCAACAGCTTCAAAGTTCGTTATCACCCATAAACACAAGTGTCTCCTCTCCTAGGAATGTTGAGCATCCTCTATTACAGGCTTCATTTGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAGCCAATCTCTCCAATGAGCTCTCGATTATCAGCATTTGCACAGCGTGAGAAACAGCACCAACAGCTGCGAAGCCTTAGTTCAAGGGACCTTGGTGCCAATGTTCCTGCCTCAATGGTTGGGTCCCCAGTTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGGAATGGAAAAGTAGATTGGTCAGTAAATGGAAATGAGTTAGGTCGATTGCAGAGATCATCATCATTTGAGCTTGGAAACAATGGGGAGGAGCCTGATCTATCCTGGGTTCAATCCCTTGTCAAGGAATCTCCGTCCGAGATAAAAGAGAAGTTGACAGGTTCTGGCCCTGTTGCATCTGTTGATGGACCGAGTTCAAATCCAAAGTCAAATCCGCAAGTTGAGTCTGTTGATCATTCTGTTCTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2187 0.4476 MCGGPEKSKSLSTSSSSAVEGSSNSKDMKNLTVHTEDSFSCLLELASNNDFEDLKLALDRDASLINEVGLWYVRQIGSKQIVLQPRTPLMVAAMYGSIDVLKLLLSCPEADVNFSCGTDKSTALHCAALGGSVNAVDVVKLLLSAGADVSCVDANGNRPVDVLVVPPKLEGLKATLEDLLSDSTSVGSVGDCFIPVSVNSSCSDSAAHLSSPENGLPFSAMASKFADTAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSISSMSPSPFAQPMSPSTSGISHSSNAWPQPNVPALHLPGSNIQTSRLRSSLSARDMPPEDFDVLQDFDGQQHLLSDLGCFSQPRPGAISVSRSGRSKTLTPSNLDELFSAEISSSPRYSDPAVASVFSPRHKSTIMNQFQQLQSSLSPINTSVSSPRNVEHPLLQASFGVSSPGRMSPRSMEPISPMSSRLSAFAQREKQHQQLRSLSSRDLGANVPASMVGSPVNSWSNWGSPHGNGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSEIKEKLTGSGPVASVDGPSSNPKSNPQVESVDHSVLGAWLEQMQLDQLVV* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0860 728 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Gso9g0860 728 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Gso9g0860 728 Gene3D - 5 166 IPR036770 -
Gso9g0860 728 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Gso9g0860 728 SUPERFAMILY Ankyrin repeat 30 164 IPR036770 -
Gso9g0860 728 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Gso9g0860 728 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Gso9g0860 728 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 23 726 - -
Gso9g0860 728 MobiDBLite consensus disorder prediction 7 27 - -
Gso9g0860 728 Pfam Ankyrin repeats (3 copies) 77 151 IPR002110 GO:0005515
Gso9g0860 728 Gene3D - 297 360 - -
Gso9g0860 728 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Gso9g0860 728 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Gso9g0860 728 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Gso9g0860 728 MobiDBLite consensus disorder prediction 691 708 - -
Gso9g0860 728 SMART ANK_2a 84 114 IPR002110 GO:0005515
Gso9g0860 728 SMART ANK_2a 119 151 IPR002110 GO:0005515
Gso9g0860 728 SMART ANK_2a 37 67 IPR002110 GO:0005515
Gso9g0860 728 MobiDBLite consensus disorder prediction 677 708 - -
Gso9g0860 728 ProSiteProfiles Ankyrin repeat profile. 84 106 IPR002110 GO:0005515
Gso9g0860 728 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Gso9g0860 728 MobiDBLite consensus disorder prediction 1 27 - -
Gso9g0860 728 PANTHER UNKEMPT FAMILY MEMBER 23 726 IPR045234 -
Gso9g0860 728 MobiDBLite consensus disorder prediction 399 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0860 Gso-Chr9 18433655 18438035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0860 1 725 C2H2 Transcription Factor Family AT5G12850 54.692 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso9g0860 Ank_2 9.1e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0860 - - gmx:100813725 1391.33