Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0853 ATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTATTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCTTGTGTCCCAAAAAAAGGCAGACTATGTTGTTTTCAGCAACAATGACTGAGGAGGTTGATGAACTTATTAAACTTTCCCTGTCGAAGCCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGGCCAGCAACCTTGACCGAGAATTAA 303 0.4389 MPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEN* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0853 100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 85 IPR027417 -
Gso9g0853 100 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 31 39 IPR000629 -
Gso9g0853 100 Pfam DEAD/DEAH box helicase 2 74 IPR011545 GO:0003676|GO:0005524
Gso9g0853 100 Gene3D - 1 93 IPR027417 -
Gso9g0853 100 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 99 - -
Gso9g0853 100 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 85 IPR014001 -
Gso9g0853 100 PANTHER ATP-DEPENDENT RNA HELICASE RHLE 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0853 Gso-Chr9 17871310 17871760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0853 4 85 Eukaryotic Initiation Factors Gene Family AT3G13920 41.463 8.65e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0853 K13181 - gsj:114368230 186.422