Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0830 ATGAAGATTCAGTGCAACGTGTGCGAGGCCGCGGAGGCCAAGGTTCTGTGCTGCGCGGACGAGGCAGCACTGTGCTGGGAATGCGACGAGAAGGTTCACGCAGCAAACAAGCTCGCCAGCAAGCACCAGAGGGTCCCTCTCTCTCTCTCCGCCTCTCACATGCCCAAGTGTGACATATGCCAGGAAATGGTTGGTTATTTCTTCTGTTTAGAGGATCGAGCTTTGCTATGTAGGAATTGTGATGTATCTATACATACAGCAAATGCCTGTGTCTCTGATCATCAAAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTTGAAGCTACTGAGCGCGGTGCTTCCTCGTCTTCTGTGAAGTCACAGTCTGGGGAGAAAATGTCTGATGCTAAATCTTCATCCATCTCCAGAAATGTTTCCTCACTGCCCCAGCCATCAAATGCCAATGAAGTGTTACCCCTCCAAATGCAAGGAGTTGAGGAGTTTCCACCAAGCAATTTCTCAGGTTATACTTCTGGAAACGTCTCACAATGGCCCATTGAAGAATTTCTCGGATTAAATGAACTCAGTCAGTATTATAATTACATGGATGGATCATCTAAGGCTGACAGTGGTAAACTTGGGGATTCTGATTCTTCTGTTTTGAGGTCTGGTGAAGAGGATATGGATGATGACGGCTTCTTGGGACGTGTTCCAGATTCATCCTGGACAGTTCCTCAGATCCCTTCCCCTCCTACAGCTTCGGGTTTATATTGGCCGAAAGTCCCTCAATATACATCTGACAGTGCCATGTCTGTTCCTGACATATGCTTTTCTCATGTGCGACAGCCCCACCATGCCCAGCATAATTCTAATGTTTCCAAAAGGCGTAGGCAACTATAA 879 0.4733 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSLSASHMPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTANACVSDHQRFLLTGVRVGLEATERGASSSSVKSQSGEKMSDAKSSSISRNVSSLPQPSNANEVLPLQMQGVEEFPPSNFSGYTSGNVSQWPIEEFLGLNELSQYYNYMDGSSKADSGKLGDSDSSVLRSGEEDMDDDGFLGRVPDSSWTVPQIPSPPTASGLYWPKVPQYTSDSAMSVPDICFSHVRQPHHAQHNSNVSKRRRQL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0830 292 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 291 - -
Gso9g0830 292 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Gso9g0830 292 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gso9g0830 292 SMART bboxneu5 52 99 IPR000315 GO:0008270
Gso9g0830 292 MobiDBLite consensus disorder prediction 113 147 - -
Gso9g0830 292 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso9g0830 292 MobiDBLite consensus disorder prediction 212 227 - -
Gso9g0830 292 Gene3D Classic Zinc Finger 1 93 - -
Gso9g0830 292 CDD Bbox1_BBX-like 5 47 - -
Gso9g0830 292 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 291 - -
Gso9g0830 292 CDD Bbox1_BBX-like 56 99 - -
Gso9g0830 292 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Gso9g0830 292 MobiDBLite consensus disorder prediction 199 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0830 Gso-Chr9 16886247 16889868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0830 1 292 C2C2-CO-like Transcription Factor Family AT1G78600 48.503 4.57e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gso9g0830 zf-B_box 5.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0830 - - gmx:100808889 598.201