Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0826 ATGGCTGTGGAAAACCAAAGGGAAGATGGGGGTTGTGATCGTTTTCCTGTGGGTATGCGTGTTCTTGCTGTGGATGACGACCCAATTTGCCTCAAGGTGTTGGAGAATCTCCTTCGCAAATGCCAGTATCATGTTACTACAACTAATCAGGCAGTTGAGGCACTGACAATGTTGAGGGAAAACAGAAATAAGTTTGACCTCGTTATCAGCGATGTGAATATGCCTGACATTGATGGATTTAAGCTCCTTGAGTTGGTGGGACTTGAAATGGACCTACCTGTCATCATGTTGTCAGCACACGGTGATACAAAGCTGGTGATGAAGGGTGTTACACATGGTGCATGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAGTTGAAGAACATATGGCAACATGTGGTTCGAAGAAAGAATTTTGATAGCAGGGATCAGAACAAGGCTTCCAATGAGGAGAAGGCTCCTAATTTTGCTGGGGGAGGTAGTCAAGGCCTAAGATCAGAAAACAGTGCTGACCAGAATAAAAGGCTTGGTAAAAAAAGGAAGGACCAAAGTGATGAAGAAGAAGAAGGTGGGGAAGAGAATGAAGATGATGAGGACCCCTCAGCACAGAAGAAAGCTCGTGTGGTTTGGTCTGTTGAGCTGCATAGAAAATTTGTTGCTGCAGTTAATCAACTGGGCCTAGATAAGGCTGTTCCCAAGAAAATACTTGACCTAATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCAAGCCATCTACAGAAATATAGACTCTATCTGAAAAAGGCAGCCCAGCAAGCTAACATGGTTGCTGCATTGGGTGGTAGTGATTCTTACCTACGTATAGGTTCAATAGATGGATATGGAGATTTTTGCACCTCATCTGGGTCTGGAAGGATTACAAACGCTACATTACCATCATATGCATCTACTGGAATTTTCAGTAGGCTGAATTCTCCAGCTGCCTTGAACATGAGAGGAATTAGTTCTTCTGCACTTATCCGGCCTGTTCAGTCTCAAAACATCAACAGCTCCTTAAACACACTTGGAAACATTCAGCCATCCATTTTTCCTGCAAATCAAAGCTCAAGTTTATTACAAGGAATTCCAACATCAATTGAGCTTAACCAATCTAAGCAAAGAAACTGTACAACTGGAATATCACAGTTAAGCCAAGTTGATTCAAGTGGATTTACAGTTGCCTCTGGCTTCCCAGACCATAGGGCTACTGTTAATGGTCCAAACAATTCTCTCCCGTGTGTCTCAAATAATCATATAATGTTACAAGGAAATCCACAAACGCATGGCCCAGGAGCGTTTAGCAATCAGTCTTCTGTCAGAGCGGCTTCTTTGTGTGCTGAATCTTTTGACGTGGGCTTATGTGGTTCTTCTAATTTGTTGGATCATAATCGGTGCAATGATAACTGGCAGAATGCAGCTCAATTGTCTAAATTTCCTGCCAATTCCTTGCCACTTTGTGAGGCTTTCAGCAATGACCAACTGCCTCCCACTAGCATCAATGATTCGAACTCAAGTACTCATATTGGCAACAACAGTCCAGTTGATTTTTCTTCTAGGATGGGAATTTCTGTTCCTTTGGAGGACACCAGAAATGAGCTGAGATGCCAAGAGGGCTTGATTGGGAATATTGTACAGCCTTCAAGTTACACACCACGACAAAGGTGGGAAGAACATAAACTGGATTATAACCAAAACATGAGCTGTCCCTTTAATTCTGTAAATTCACACGCTTCCTCCAGTGGAGTGACAAGTTCTATGGGGCATGTTTTAAACCAAAATAATACAATTTGCAGCAATAGAGTTGATGCATCATCTTTGGTTGGCCAACTAAATGGAGCATCCCCATCAATCAGCCGGTGCACTGAAGTTGAGAAATTCTCTTCAGACATTCGACTGAAGCCAAATGAAGCCTACATTTTGGAGCAAATGAAGTCCCAAGATGGATTTATGCAGAATACTTTTGGGACCTTGGATGACATAATGGGTGTAATGGTCAAAAGGGAGCAAAATGAGTCGACATTGTTGGATGGAGAAATGGGATTTGATGCCTACCCTGTTGGATCATGCAACTGA 2097 0.4258 MAVENQREDGGCDRFPVGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVEALTMLRENRNKFDLVISDVNMPDIDGFKLLELVGLEMDLPVIMLSAHGDTKLVMKGVTHGACDYLLKPVRIEELKNIWQHVVRRKNFDSRDQNKASNEEKAPNFAGGGSQGLRSENSADQNKRLGKKRKDQSDEEEEGGEENEDDEDPSAQKKARVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKAAQQANMVAALGGSDSYLRIGSIDGYGDFCTSSGSGRITNATLPSYASTGIFSRLNSPAALNMRGISSSALIRPVQSQNINSSLNTLGNIQPSIFPANQSSSLLQGIPTSIELNQSKQRNCTTGISQLSQVDSSGFTVASGFPDHRATVNGPNNSLPCVSNNHIMLQGNPQTHGPGAFSNQSSVRAASLCAESFDVGLCGSSNLLDHNRCNDNWQNAAQLSKFPANSLPLCEAFSNDQLPPTSINDSNSSTHIGNNSPVDFSSRMGISVPLEDTRNELRCQEGLIGNIVQPSSYTPRQRWEEHKLDYNQNMSCPFNSVNSHASSSGVTSSMGHVLNQNNTICSNRVDASSLVGQLNGASPSISRCTEVEKFSSDIRLKPNEAYILEQMKSQDGFMQNTFGTLDDIMGVMVKREQNESTLLDGEMGFDAYPVGSCN* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0826 698 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Gso9g0826 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 IPR045279 GO:0009736
Gso9g0826 698 Pfam Response regulator receiver domain 21 129 IPR001789 GO:0000160
Gso9g0826 698 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Gso9g0826 698 Gene3D - 18 156 - -
Gso9g0826 698 MobiDBLite consensus disorder prediction 141 205 - -
Gso9g0826 698 Gene3D - 202 264 - -
Gso9g0826 698 CDD REC_typeB_ARR-like 21 135 - -
Gso9g0826 698 SUPERFAMILY Homeodomain-like 204 263 IPR009057 -
Gso9g0826 698 MobiDBLite consensus disorder prediction 172 187 - -
Gso9g0826 698 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Gso9g0826 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 - -
Gso9g0826 698 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Gso9g0826 698 PIRSF RR_ARR_type-B 1 698 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso9g0826 698 SUPERFAMILY CheY-like 18 142 IPR011006 -
Gso9g0826 698 SMART REC_2 19 131 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0826 Gso-Chr9 16603513 16608420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0826 1 692 Response Regulator Gene Family AT2G25180 40.057 2.40e-130 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso9g0826 Response_reg 5.9e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0826 K14491 - gmx:100807822 1390.17