Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0822 ATGCAACCCTGTAGCAGAGAAATGCAAGGCCTCAACTCCCTCTTAAATTCTTCATCCCAAATCTCCCTTCAAGACCTTCACAATCACACCACTAACCAGATCCAAAATTCACACATGAACCACCAACACCACCACCAACAACAACAACAACACCAACAACAACAACACCAACTTGCTCACTTTGATTCAACTTCTCACGACGACTTTCTCGAACAAATGCTCTCTTCCTGCTCTTGGACAGATCTCAACCATAACAAGCCATTATTATGGGACCCTAACACCCCCAACGACATCAAGCCCCCCGACGAAACGACGCCGTCCAACAACAACGACGACGCTACTGCTAATGTCGTTTTTCCCTCCTTCGACGAGCACTCCACCTTAGCCTCCAAGTTCCGCAACCACCAGATCAGCCCCAACAACGCCCCAAAAAACGCCGCGGCGGCGGCTTTCATGCTCCAACACCAACTCCTTAGAGACTCTGGTCTTCTCAACATGCCACTTTCCTTGCCTGGAAACGACGTCGTTGACGCTTCTTCCTTCAAATCCCCCAATCCCGGTGGTGAGGCTTCAGTCCAAGCTCTCTACAACGGGTTCGCCGGATCTCTGCATGGCGCAGGCCAATCCTCGAACCAGACTCAGCATTTTCAAAACCCTCAGGGAAGTTCGAATCCAATGCAAGGCCAAAATTTTGGGGCGGCACCAGCTGGTGGCGGTGGCGCAACGAACCAAGCTCCGGGGAGTGGCGCTGCCGCGGGCGGCGCGCCGGCTCAGCCAAGGCAAAGGGTTCGAGCTAGGAGAGGACAAGCCACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATCGCAGAGAGAATGAAGGCCCTACAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGACTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTTGCTGATATGTACTCTGAGGGAGGCGGTGACTGCATCCAAGCCAACGGCAACAGTAACGGCGGTGGGGCCCACGCTCCAAACTCCAACACCAACCAAACGTCAGCGACAACACCCTCAAACGACAGCCTAACGATGACGGAGCACCAGGTAGCGAAACTAATGGAAGAAGACATGGGTTCCGCCATGCAGTACCTTCAAGGGAAGGGTCTTTGCCTCATGCCAATCTCCCTCGCCACTGCAATCTCCACTGCCACGTGTCACACCAGGAACGTTACCGTTAACGTTAACCCCTTGATCAATGCCGCCGCCGCCGCCCAGATTCCGACAGCCGCCAACCCCGCTGGTGACGGGCCGTCGTCTCCGAGCATGTCCGTGCTGACGGTGCAGTCCGCCGTCGCGGTCAACGACGGCTCCGCCGCCGTGAAGGACGCTGCCTCCGTTTCGAAGCCGTGA 1473 0.5547 MQPCSREMQGLNSLLNSSSQISLQDLHNHTTNQIQNSHMNHQHHHQQQQQHQQQQHQLAHFDSTSHDDFLEQMLSSCSWTDLNHNKPLLWDPNTPNDIKPPDETTPSNNNDDATANVVFPSFDEHSTLASKFRNHQISPNNAPKNAAAAAFMLQHQLLRDSGLLNMPLSLPGNDVVDASSFKSPNPGGEASVQALYNGFAGSLHGAGQSSNQTQHFQNPQGSSNPMQGQNFGAAPAGGGGATNQAPGSGAAAGGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMYSEGGGDCIQANGNSNGGGAHAPNSNTNQTSATTPSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNVTVNVNPLINAAAAAQIPTAANPAGDGPSSPSMSVLTVQSAVAVNDGSAAVKDAASVSKP* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0822 490 MobiDBLite consensus disorder prediction 355 382 - -
Gso9g0822 490 MobiDBLite consensus disorder prediction 98 113 - -
Gso9g0822 490 MobiDBLite consensus disorder prediction 203 230 - -
Gso9g0822 490 MobiDBLite consensus disorder prediction 86 113 - -
Gso9g0822 490 Pfam Helix-loop-helix DNA-binding domain 274 319 IPR011598 GO:0046983
Gso9g0822 490 Gene3D - 264 326 IPR036638 GO:0046983
Gso9g0822 490 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 329 IPR036638 GO:0046983
Gso9g0822 490 SMART finulus 275 324 IPR011598 GO:0046983
Gso9g0822 490 MobiDBLite consensus disorder prediction 37 60 - -
Gso9g0822 490 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Gso9g0822 490 PANTHER TRANSCRIPTION FACTOR BHLH69 62 437 - -
Gso9g0822 490 MobiDBLite consensus disorder prediction 203 275 - -
Gso9g0822 490 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 62 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0822 Gso-Chr9 16207441 16211892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0822 251 489 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.646 9.59e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso9g0822 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0822 - - gmx:100807286 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1738 15 31402401 31406750 Gso9g0822 9 16207441 16211892 GST