Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0796 ATGGCTGGAATGCTTCCTGGAGTTGAATGTGCTAGAAGGAGAAGGTTTCGTCGATGTTCGGATTCAAATTCAACTTCTTTGGGATCACATGCATCCACAAGGCGTTCTTCTTTCTGTTTGTATGCTAGTAACCATGATCAATGTCGCCTTTTCTCATCCTCTTCCCTGCAAAGAAGCATGTTATACCAGGCACACCCTGATGAGAATATGGGAGGAGTGGCCAGAGAAGCCAAACAGAGATTGGATGACAAGTTCAGAGCTCAAAGGATGTCAGAAAACAAAAGGCAAAACAACACAAAATGTGTGGAGGGCAAAAGAACAAGCATAATAGTGTTGCACACAGAGGAATATGGGTCAAAGAAAAGTGGTTCAAGGAGGTTCAGTTGGACCAAATGGAGCTGGAAAGCATCAGAACAAGAGGAATGTGCTGTGTGCTTGGAATCATTCAGAGTTGGAGAGACACTGATCCATCTTCCTTGTGCCCATAGGTTCCATGACAGATGCTTGAAACCATGGTTGGAAAATAATTCTTATTGTCCATGTTGCAGAACTACCATTCTTCCCCTCTAG 570 0.4368 MAGMLPGVECARRRRFRRCSDSNSTSLGSHASTRRSSFCLYASNHDQCRLFSSSSLQRSMLYQAHPDENMGGVAREAKQRLDDKFRAQRMSENKRQNNTKCVEGKRTSIIVLHTEEYGSKKSGSRRFSWTKWSWKASEQEECAVCLESFRVGETLIHLPCAHRFHDRCLKPWLENNSYCPCCRTTILPL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0796 189 Pfam Ring finger domain 141 183 IPR001841 -
Gso9g0796 189 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Gso9g0796 189 SMART ring_2 142 182 IPR001841 -
Gso9g0796 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 188 IPR013083 -
Gso9g0796 189 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 185 - -
Gso9g0796 189 SUPERFAMILY RING/U-box 127 188 - -
Gso9g0796 189 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 185 - -
Gso9g0796 189 CDD RING-H2_PA-TM-RING 141 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0796 Gso-Chr9 13948138 13950040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0796 1 86 C3H Transcription Factor Family AT2G15580 46.316 1.89e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0796 - - gmx:100527583 342.043