Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0791 ATGGCTTTCCACGAGCATCTACCGCACGAAATCACGTTCCAGCCGTTCGCGGAGGAGCAGCAGCAGCAGCAGTTAGGTCAGAGCCGGGACATGCAGCGGCTCCTGCCACTCTCGGGCGGGGCGCCGACGTGGTTGAACAACAGCAACGCCGCCACGCTCCGCCAGCAGAATTTCCTCCACCTGCAGCCGGAATCCGCCGCGACGGCGGCGCAGCAAAACGACGACGTTCGTGCTATGGATCGGAACCGGACCGAGAGCAACTCTGAAGCGGACGATTTGGCGGAATACAAAGCAGATATTTTAGGTCACCCTCTCTACGACCAGCTCCTATCGGCGCACGTCTCGTGCTTGAGAATCGCCACGCCCGTTGACCAGCTTCCAAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTCGTCGACAAGTACTCCGGCCTCGGAAATGGAAACGGCGTCGTCGATGACAAAGAGCTCGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGTTGGAACAATCTCTACAAAGCTTGACTGGTGTATCTCCCGGCGAAGGAACGGGTGCAACAATGTCCGACAATGAAGAAGATCAGGCAGAGAGTAATGCAAACTTATACGAAGGAGGCATGGATGGAGCTGATAGTCTCAGCTTTGGTCCTCTTGTTCCCACTGAGACTGAAAGATCTTTGATGGAGCGTGTGAGGCAGGAGCTGAAGCACGAGTTAAAACAGGGTTACAAGGACAAGATTGTGGATATAAGAGAGGAAATTCTACGAAAGAGAAGAGCCGGGAAGCTACCCGGCGACACAACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCTAAATGGCCATATCCAACAGAAGAGGACAAGGCAAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGTAGTGGTGCAGGGGAATCAAGTAACCAGAGCTTCATGTGA 1110 0.5153 MAFHEHLPHEITFQPFAEEQQQQQLGQSRDMQRLLPLSGGAPTWLNNSNAATLRQQNFLHLQPESAATAAQQNDDVRAMDRNRTESNSEADDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDNEEDQAESNANLYEGGMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSGAGESSNQSFM* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0791 369 Pfam KNOX1 domain 96 137 IPR005540 GO:0003677|GO:0005634
Gso9g0791 369 Pfam ELK domain 260 281 IPR005539 GO:0003677
Gso9g0791 369 SUPERFAMILY Homeodomain-like 282 346 IPR009057 -
Gso9g0791 369 Gene3D - 286 363 - -
Gso9g0791 369 ProSiteProfiles ELK domain profile. 260 280 IPR005539 GO:0003677
Gso9g0791 369 MobiDBLite consensus disorder prediction 1 28 - -
Gso9g0791 369 MobiDBLite consensus disorder prediction 76 90 - -
Gso9g0791 369 SMART KNOX1_2 94 138 IPR005540 GO:0003677|GO:0005634
Gso9g0791 369 CDD homeodomain 283 344 IPR001356 GO:0003677
Gso9g0791 369 Pfam KNOX2 domain 152 202 IPR005541 GO:0003677|GO:0005634
Gso9g0791 369 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 25 362 - -
Gso9g0791 369 SMART HOX_1 282 347 IPR001356 GO:0003677
Gso9g0791 369 MobiDBLite consensus disorder prediction 65 90 - -
Gso9g0791 369 MobiDBLite consensus disorder prediction 337 369 - -
Gso9g0791 369 SMART KNOX2_2 148 203 IPR005541 GO:0003677|GO:0005634
Gso9g0791 369 SMART ELK_2 260 281 IPR005539 GO:0003677
Gso9g0791 369 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677
Gso9g0791 369 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677|GO:0006355
Gso9g0791 369 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 25 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0791 Gso-Chr9 13709192 13723148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0791 94 364 Homeobox Transcription Factor Family AT5G11060 81.685 9.66e-165 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso9g0791 KNOX2 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0791 - - gmx:100803034 721.079