Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0740 ATGGTTCGTCCAAAATTAATCTTAAAGCCAATCCCAAATGGGAGAGATCGTGATTTGGCTTTCACGAAGAGAAAGAAGGCACTAATGACGAAAATGACTGAATTTTCTAACGTGTGTGGAGTCAAAGCTTGCATGATTATGTATGATGGCAATTATGGTGATGCTCCACCACTGACTTGGCCCCAAGATGACCCTATTGAGGTGCACTCCATCATTAAAAGGTATGAGAGTATAAAGAATGAGAAACATCCTAAGAACTTTGATCTGAATAACTTTTTTGAGATTAGGAAGAATATGGTTGACAATGATATTTCCAAAGTCCAAAAAAGAGACCCTCAAGATCAAATATCCAACTTGGCATTCAAGCTTCAACAACCTAGGTGTAGAGGAGCTGAGGAATTTCATTGA 408 0.3848 MVRPKLILKPIPNGRDRDLAFTKRKKALMTKMTEFSNVCGVKACMIMYDGNYGDAPPLTWPQDDPIEVHSIIKRYESIKNEKHPKNFDLNNFFEIRKNMVDNDISKVQKRDPQDQISNLAFKLQQPRCRGAEEFH* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0740 135 PANTHER MADS BOX PROTEIN 5 110 - -
Gso9g0740 135 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Gso9g0740 135 Gene3D - 14 122 IPR036879 GO:0003677|GO:0046983
Gso9g0740 135 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Gso9g0740 135 PANTHER PROTEIN, PUTATIVE-RELATED 5 110 - -
Gso9g0740 135 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Gso9g0740 135 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0740 Gso-Chr9 11528521 11528928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0740 1 123 Type I MADS-box Gene Family AT1G22590 30.894 1.15e-10 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso9g0740 SRF-TF 8.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0740 - - gmx:102663949 284.263