Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso9g0686 | ATGGAGTCTCAATTAGAGGGGAAAAACCAGTATTTGTATGGACCTGTGGTGCCTGAGATGAAGAGTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTTTTTACTGCTAGGCAACTGAATTCAGTGCCATCAGATTGTAGGAGCCGCGAGTTATTTCCTACTGATCCTGAAATTCTTGCAACCGGCGGTGCTTCTAACAGTTTGTCTTCTGCATATGATGATGCTAACCTCGGGGAAGGAAAGAGAGAATTGGAGAAGAGGAGGAGGGGTGTTAATGACGATGGAGGGGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTATACCCTATCATGGAAGGGGAGGAGAAAAGTGGAAAGAAGACAAAGATGACCGCGAGTACTTCGAGCCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAATGCGAAGGATTACCATCGCCGCCACAAAGTTTGTGATATGCATTCTAAGGCTACCCAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGCTGTCGTAGGCGTCTGGCAGGCCACAATAAAAGGAGGAGGAAAACACTTCCTGATGCAACTGTAGTTAATGGAGGCTCTCTGAATGAAGAAAAGGGCAGTAGCTATCTGTTAATGAGTTTGCTAAGGATACTGTCCAATATGCATTCAAATGGCTCGGATAATATGAGGAACCAGGATGTTCTATCACATCTTTTGAGGAACCTGGCAAGTCTGGCTGGTACAATTAATGGAAGAAATATAGTGTCTTTATTAGAGGGATCTCAAGGTTTGGTAAAAGCTGGGACATCTGGAGCTGCGCAGAATGTTCCTAACACAAATTCTGATGGCCCTGAACCATCCAGACCTTTCGATTCTTCTATCAAAATGGATGATGGTCTAATCCATCGGGACCCTCCAGAGTCTATGGTACAACGTGAGACGACTCCTGCTAATGATATGGCTAAAAAATGTATAGCTTCAGGCAGTGATGGAGTAGGAAGTTTAAAATCTCCTTCAGTACCGCAGTCCTCAAATGTACTTCTGTCAAGGGATGGCCTTCCACCCCAATCAGTTGCAGCACAGACTACAGTTGGAAGAATTGGGTTAAGTAATATTGACCTGAATAATGTATATGATGATGTACAGGATTATGTTGAGAACACGAGGAATTCTTGTCCTCCTCTGCCTTCAGGGAATGGGTCTCTTGATCATCCTTTATGGATCCAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGTACAGATCGAATTGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTCCCCCATGCTCTCCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACTATATATCTCCGTCTAGAAAATTCCGCTTGGGAAGAGCTATGCTACAATCTAGAATCCAGCTTGAGAAAGCTTGCTGCGCCAAATGATTCTTTCTGGAGAACAGGATGGATATATACAAGAGTGCAGCACTCTGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGCACCATTGCGCCTCAAAAGTCCGCAAAATTGTCAAATTTTATGCGTTAAACCACTTGCTGTTTCTGCAAGTTCAAGTGCTCAATTTGTTGTGAAAGGATTCAATTTTTTGCTGTCTAACACGAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACAAGATAGTTGTTATGATTTGATTGACAGTGCTGATGCAGTCAATGGACATCAAGAGCTTCAGCATCTCAGTTTCTCTTGTCATGTACCGAATGTGACTGGAAGAGGGTTTATTGAGGTGGAAGACAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTGGCAGAGCAAGAAATTTGTTTAGAGATCTGTACGCTAGACAATGTCATTGAGGCAGCAGAGATGGCTGATGACAACCAGATAAAAACTAACCTAATGGAAGAAAAGACTCAAGCATTGTATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCCATGGCACCTGTCCAAGATCGCTTCCATTTTAATCGGTTCATATGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTATCTTTGAGGGCACTGTTGATACTGGAGATCATGCCTCTGTTGAGTTAGCTTTGTTAGAGATGGGTCTTCTACACAAAGCTGTAAAAAGAAATTGTCGGCCTATGGTGGAAATACTATTAAAATTTGTGCCAGTTAAAGCTTCAGATGGTGGAGACAGTAATGAGAAGCAAGTCAACAAGTCCCCTGACAGATTCATATTCAGACCTGATACTGTTGGGCCTGTTGGGTTGACTCCCCTTCATGTTGCAGCAAGTATGCATGGTTCGGAGAATGTATTGGATGCATTAACTGATGATCCAGGAATGGTGGGAACTGAGGCATGGAAAAGTGCTCAGGATGCTACAGGTTTGACCCCCTATGACTATGCATCCATGCGGGGCTACTACTCTTACATTCAACTTGTCCAGAGTAAAACAAGCAACACATGCAAAAGCCAACACGTGCTTGATATCCCAGGCACCCTTGTAGATAGTAACACAAAGCAGAAGCAATCAGATAGGCACAGATCATCAAAAGTTTCAAGTTTGCAGACTGAGAAGATTGAAACAACAGCAATGCCACGTCGTTGTGGGCTATGCCAGCAAAAGCTGGCGTACGGTGGCATGAGAAGGGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTGGCCATTGCAGCCGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGTTCACCCAAAGTTTACTATGTATTCCAGCCATTCAGCTGGGAATCATTGGAGTATGGGTCAATCTAA | 3099 | 0.4382 | MESQLEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTARQLNSVPSDCRSRELFPTDPEILATGGASNSLSSAYDDANLGEGKRELEKRRRGVNDDGGVEMNDGAGSLNLNLGGQVYPIMEGEEKSGKKTKMTASTSSRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKATQALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTLPDATVVNGGSLNEEKGSSYLLMSLLRILSNMHSNGSDNMRNQDVLSHLLRNLASLAGTINGRNIVSLLEGSQGLVKAGTSGAAQNVPNTNSDGPEPSRPFDSSIKMDDGLIHRDPPESMVQRETTPANDMAKKCIASGSDGVGSLKSPSVPQSSNVLLSRDGLPPQSVAAQTTVGRIGLSNIDLNNVYDDVQDYVENTRNSCPPLPSGNGSLDHPLWIQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPTEIESYIRPGCIILTIYLRLENSAWEELCYNLESSLRKLAAPNDSFWRTGWIYTRVQHSVAFLYNGQVVLDAPLRLKSPQNCQILCVKPLAVSASSSAQFVVKGFNFLLSNTRLLCALEGKYLVQDSCYDLIDSADAVNGHQELQHLSFSCHVPNVTGRGFIEVEDNGLSSCSFPFIVAEQEICLEICTLDNVIEAAEMADDNQIKTNLMEEKTQALYFIQEMGWLLHRSRVKVRLGPMAPVQDRFHFNRFIWLVGFSMDHDWCAVMKKLLNIIFEGTVDTGDHASVELALLEMGLLHKAVKRNCRPMVEILLKFVPVKASDGGDSNEKQVNKSPDRFIFRPDTVGPVGLTPLHVAASMHGSENVLDALTDDPGMVGTEAWKSAQDATGLTPYDYASMRGYYSYIQLVQSKTSNTCKSQHVLDIPGTLVDSNTKQKQSDRHRSSKVSSLQTEKIETTAMPRRCGLCQQKLAYGGMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSI* | 1033 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso9g0686 | 1032 | MobiDBLite | consensus disorder prediction | 446 | 474 | - | - | |
| Gso9g0686 | 1032 | MobiDBLite | consensus disorder prediction | 68 | 111 | - | - | |
| Gso9g0686 | 1032 | MobiDBLite | consensus disorder prediction | 324 | 342 | - | - | |
| Gso9g0686 | 1032 | Pfam | SBP domain | 148 | 221 | IPR004333 | GO:0003677 | |
| Gso9g0686 | 1032 | SUPERFAMILY | SBT domain | 146 | 227 | IPR036893 | GO:0003677|GO:0005634 | |
| Gso9g0686 | 1032 | MobiDBLite | consensus disorder prediction | 936 | 958 | - | - | |
| Gso9g0686 | 1032 | Gene3D | - | 790 | 931 | IPR036770 | - | |
| Gso9g0686 | 1032 | ProSiteProfiles | Zinc finger SBP-type profile. | 145 | 222 | IPR004333 | GO:0003677 | |
| Gso9g0686 | 1032 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 13 | 1031 | IPR044817 | GO:0003677 | |
| Gso9g0686 | 1032 | MobiDBLite | consensus disorder prediction | 84 | 103 | - | - | |
| Gso9g0686 | 1032 | MobiDBLite | consensus disorder prediction | 301 | 377 | - | - | |
| Gso9g0686 | 1032 | SUPERFAMILY | Ankyrin repeat | 803 | 919 | IPR036770 | - | |
| Gso9g0686 | 1032 | MobiDBLite | consensus disorder prediction | 301 | 320 | - | - | |
| Gso9g0686 | 1032 | MobiDBLite | consensus disorder prediction | 941 | 955 | - | - | |
| Gso9g0686 | 1032 | Gene3D | - | 139 | 209 | IPR036893 | GO:0003677|GO:0005634 | |
| Gso9g0686 | 1032 | PANTHER | TRANSCRIPTION FACTOR SBP FAMILY-RELATED | 13 | 1031 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso9g0686 | Gso-Chr9 | 9544156 | 9555761 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso9g0686 | 1 | 1031 | SBP-box Gene Family | AT3G60030 | 47.760 | 0.0 | 819 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | SBP | Gso9g0686 | SBP | 5.3e-29 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso9g0686 | - | - | gmx:100776125 | 2041.54 |
Event-related genes