Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0642 ATGATGGATAAAATCCACCATTGTTGTTCTTTTCTTAATAGGGGAATGAGAACACAAGAATTGGTGGTAACCTTTTTAGTATTGGGATGTGCACTGACGTGGGTCTCCATGTCTGATGCACTTGTTGGTGGTCATCAAGAGCATGCTCACAATGAATGCAATCTTACAAGATATCCCAATCTATGTGCTGAAACCTTAATGGAATTGGGTTTAGGGAATCAAAATGTTGACAACAATATTGAGGCTCTTGTTAACAAAACCATATTTGAAACCAGCTTGCCAAGTTCATATTTTGCTGAATTCAAGACTGGGGAAGCTCAACCAGTTCATTCAGTTGTTGCAGACTATTGTGAAGAGCTAATGAGCATGTCACTGAAAAGGCTAGACCAATCCTTGAGAGCACTGAAATCCCCTAAAAGAAACACCAATGACATCCAAACATGGCTAAGTGCTTCTCTAACTTTCCAACAATCTTGCAAAGACCATGTTCATGCACACACCTCAACACTCTCTACAGATGATCACCTTATGGAAAGGATGTCCAACAAAATGGACTATCTCTCACAATTGGGAAGCAACTCATTAGCCCTTGTTAACCAAATGAGCACAACAACAAGCCACAATATTGGTGATAATAATAATGAAAAGGAACATGAATTTCCCATTTGGGTATCATCCAAAGGACGAAAACTGCTTCAAGGAGCAACCATAAAGGCAAATGCAATAGTTGCGCAAGATGGTTCAGGAAACTACAAAACAGTTTCTGAAGCCATCGAGGCAGCTTCAGGAACAACAAGGTTTGTGATTTATGTTAAGGAAGGGGTTTATAAGGAGAAGATTAACACCAACAAGGATGGTATCACCTTGATTGGAGATGGAAAATACTCTACTCTTATTGTTGGAGATGACAGTGTTGCCAAGGGTGCTATCTTACCTGACTCCGCCACATTTACAATCACAGGCGATGGCTTCATTGCGCGAGACATCGGCTTCCACAACAATGCGGGCCCCGAGGGCCAGCAGGCCGTAGCCCTAAACATAGCCTCCGACCGCTCCGTCTTTTACAGATGCAGTATAGCAGGCTACCAGGACACCCTCTACGCCCACGTCCTCCGCCAGTTCTACCGAGAATGTGATATCTATGGCACAATCGACTTCATCTTTGGAAACGCTGCCGCGGTCTTCCAGCGCTGCAGCCTCGTCCTCCGCCGCCCCCACGGCCACGCCAGCTACAACGCCGTCCTGGCCAACGGCCGAACCGACCCGGGCCAGAACACCGGCTTCTCCGTCCACAAGTGCACTATATCGCCGAGCTCCGAACTCTCCTCGGTGAAGGGCTCTTATCTTTCTTTTCTTGGGAGGCCCTGGAAGGAGTATTCTAGGGCTGTGGTGATGGAGAGCAGCATAGACGACGCCGTTGCTGCTAGTGGCTGGATCGAGTGGCCTGGGTATGGAGGGTCTGTGTTGAGGACTTTGTATTTTGCCGAGTATGGGAATGAAGGTGCCGGCGCTGGAACTAGCAAGAGGGTGCATTGGCCTGGGTTTCGTGTTCTTGAGGCTGAAGAAGCTCTTAAGTTCACTGTTGCTGGTTTTATCGGTGGAAACTCGTGGATTCCCTCCACTGGAGTTGCTTTCATTTCGGGGCTTAATTAA 1653 0.4707 MMDKIHHCCSFLNRGMRTQELVVTFLVLGCALTWVSMSDALVGGHQEHAHNECNLTRYPNLCAETLMELGLGNQNVDNNIEALVNKTIFETSLPSSYFAEFKTGEAQPVHSVVADYCEELMSMSLKRLDQSLRALKSPKRNTNDIQTWLSASLTFQQSCKDHVHAHTSTLSTDDHLMERMSNKMDYLSQLGSNSLALVNQMSTTTSHNIGDNNNEKEHEFPIWVSSKGRKLLQGATIKANAIVAQDGSGNYKTVSEAIEAASGTTRFVIYVKEGVYKEKINTNKDGITLIGDGKYSTLIVGDDSVAKGAILPDSATFTITGDGFIARDIGFHNNAGPEGQQAVALNIASDRSVFYRCSIAGYQDTLYAHVLRQFYRECDIYGTIDFIFGNAAAVFQRCSLVLRRPHGHASYNAVLANGRTDPGQNTGFSVHKCTISPSSELSSVKGSYLSFLGRPWKEYSRAVVMESSIDDAVAASGWIEWPGYGGSVLRTLYFAEYGNEGAGAGTSKRVHWPGFRVLEAEEALKFTVAGFIGGNSWIPSTGVAFISGLN* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0642 550 CDD PMEI-like_3 53 203 - -
Gso9g0642 550 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 200 IPR006501 GO:0004857
Gso9g0642 550 SUPERFAMILY Pectin lyase-like 235 548 IPR011050 -
Gso9g0642 550 Gene3D - 234 549 IPR012334 -
Gso9g0642 550 Pfam Pectinesterase 240 535 IPR000070 GO:0030599|GO:0042545
Gso9g0642 550 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 202 IPR035513 -
Gso9g0642 550 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 201 IPR035513 -
Gso9g0642 550 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Gso9g0642 550 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 20 548 - -
Gso9g0642 550 PANTHER PECTINESTERASE 20 548 - -
Gso9g0642 550 Pfam Plant invertase/pectin methylesterase inhibitor 51 197 IPR006501 GO:0004857
Gso9g0642 550 SMART PMEI_2 44 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0642 Gso-Chr9 8164430 8169039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0642 16 549 Carbohydrate Esterase AT2G45220 41.929 3.78e-130 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0642 K01051 - gmx:100795439 1112.06