Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0611 ATGGGGGCGAAGAAGCAGAGCCAGGGAGTGAAAAATAAGGGTAATGGCGCCAACAATGATGTTTTCGCGTCATGCTCCTTCTCCAGCCTTGGACTTGATTCCAATTTATGTGAACAACTTCGTGATAGGTTGGGGTTTGAAGTTCCAACGCTGGTGCAAGCTCAAGCAATTCCCGTTATTCTCTCGGGGCGGCATGCATTGGTGAATGCTGCAACGGGCACGGGGAAGACTGTTGCGTATTTGGCTCCGATTATTCATCACTTGCAGGGTTATGAAAATCGGATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGGGAGCTATGCTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGGTTTCATTGGATTGTTCCAGGATACATCATGGGTGGTGAAAAGAGATCAAAAGAGAAATCAAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAACACAACAGCATTCTTGTACTCAAATTTACGCTGGATAATTTTTGATGAAGCTGACCGGATTTTGGAATTGGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGCTCAAGGAAAAAAGGGCATGGTGATCAAGAGAATACAGTTCTAACACACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAATGAGAAAGTGAACCACCTTGCTAAAATGAGTCTAGACAATCCAGTTATGATTGGTCTTGATGGTAAGAAAATGGAACCAATTTCAACAATTAAAAGGCTTGATTCTTCAGAATCTGATGAAGACAGTGAAGATAAATATTCCAGTAAAGTACCAACAGTTGGAGATTACAAAGTCCCCATACAGTTGATTCAGAGATACATGAAAGTGCCATGTGGTTCACGGCTTCCTGTACTTCTTTCAATTCTAAAGCATCTCTTTGAAAGAGAACCTTCACAAAAGGTCGTTTTATTCTTTTCAACATGTGATGCAGTAGATTTTCACTATTCACTGTTAAGTGAATTTCAATTTTCATCCTATCCACAAACAGAAGGGGTCCGACAGGTGTTTCTTGGATGCAAAACTTTCCGGTTACATGGTAATATGCAACAAGAGGACCGGAGAACCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCTCTGCTTTTGTCCACTGATGTTTCTGCTAGAGGATTGGATTTTCCAAAGGTTAGGTGCATCATACAATATGATTCTCCTGGGGAAGCTACGGAATATGTTCATAGAGTTGGTAGAACTGCTCGACTGGGTGAAAGAGGAGAGTCATTATTATTTCTGCAACCAGTTGAAATAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCACTCACGGAGTATCCTGTCCTCAAAGTGTTGGATAGTTTTCCACTACAAAAGAACCACACAAAGAAGTCTGTTTTCTTAGAGTCACATCCCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCCAAGCCCGAAATGGATGAACATGCCAGGAAGGCATTTTGCTCTTGGGTTCGTGCGTACACAGCCCATCGCGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTCCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGGCAGTCATTCCAAAAGCAAAATAAGAAGAGAAAGAGATTTGAGAAGAAAAACGGGTTTACAAAAAAGAGAAAAGTTGCCAGTGTGACAGAATGCAGACCATGA 1791 0.4154 MGAKKQSQGVKNKGNGANNDVFASCSFSSLGLDSNLCEQLRDRLGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIIHHLQGYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGEKRSKEKSRLRKGISILIATPGRLLDHLKNTTAFLYSNLRWIIFDEADRILELGFGKDIEEILDLLGSRKKGHGDQENTVLTHSKIQRQNLLLSATLNEKVNHLAKMSLDNPVMIGLDGKKMEPISTIKRLDSSESDEDSEDKYSSKVPTVGDYKVPIQLIQRYMKVPCGSRLPVLLSILKHLFEREPSQKVVLFFSTCDAVDFHYSLLSEFQFSSYPQTEGVRQVFLGCKTFRLHGNMQQEDRRTSFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTEYPVLKVLDSFPLQKNHTKKSVFLESHPWVLCLQKALEAFIMSKPEMDEHARKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQNKKRKRFEKKNGFTKKRKVASVTECRP* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0611 596 Gene3D - 309 589 IPR027417 -
Gso9g0611 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 54 IPR014014 GO:0003724
Gso9g0611 596 SMART DUF4217_3 498 563 IPR025313 -
Gso9g0611 596 MobiDBLite consensus disorder prediction 568 582 - -
Gso9g0611 596 MobiDBLite consensus disorder prediction 566 596 - -
Gso9g0611 596 CDD SF2_C_DEAD 298 447 - -
Gso9g0611 596 CDD DEADc_DDX31 36 254 - -
Gso9g0611 596 Gene3D - 2 256 IPR027417 -
Gso9g0611 596 SMART ultradead3 45 266 IPR014001 -
Gso9g0611 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 253 IPR014001 -
Gso9g0611 596 PANTHER RNA HELICASE 14 591 - -
Gso9g0611 596 Pfam Domain of unknown function (DUF4217) 500 560 IPR025313 -
Gso9g0611 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 469 IPR027417 -
Gso9g0611 596 Pfam Helicase conserved C-terminal domain 316 438 IPR001650 -
Gso9g0611 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 485 IPR001650 -
Gso9g0611 596 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 181 189 IPR000629 -
Gso9g0611 596 SMART helicmild6 341 438 IPR001650 -
Gso9g0611 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 253 IPR027417 -
Gso9g0611 596 Pfam DEAD/DEAH box helicase 51 241 IPR011545 GO:0003676|GO:0005524
Gso9g0611 596 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 14 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0611 Gso-Chr9 7410478 7417230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0611 26 470 Eukaryotic Initiation Factors Gene Family AT3G19760 24.053 1.56e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0611 K14806 - gmx:100805157 1157.13