Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0610 ATGAAGGCTCCTCCCAATGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCACTGGTTTCTTTACCTCCTGTTGGAAGTGTTGTGGTTTACTTCCCTCAAGGACACAGCGAGCAAGTTGCTGCATCCATGCAAAAGGAGGCTGACTTCATACCTAGTTATCCTAACCTTCCATCCAAATTGATTTGCATGCTTCACAATGTTGCCTTGCACGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACACTTCAACCTGTAAATAAATATGACAAGGAAGCACTATTGGCATCAGACATGGGTCTCAAACAAAACCAACAACCTACCGAGTTCTTTTGCAAAACACTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCGGAGAAAATATTCCCACCTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGAGGACAACCGAAGAGGCATCTATTGACTACCGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTCTTTGCTGGAGATTCAGTTCTTTTTATCAGAGATGAAAAACAACAACTTCTTTTAGGTATAAAGAGGGCTAATAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGCATTCTTGCTGCTGCAGCTCATGCAGCTTCAAATAACAGCCCGTTTACTATATTTTATAATCCAAGGGCCAGCCCTTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAGGCCCTGTTCAATCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAATCAGGGGTACGCAGATATATGGGTACAATCACTGGTATCACTGACTTGGATCCTGTCCGATGGAAGAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGACTGCCGGTGAGCGCCCGAGCAGGGTTTCTATTTGGGATATTGAGCCAGTGGTGACTCCTTTCTATATTTGTCCTCCTCCATTTTTTAGGCCTAAGTTCCCCAAGCAGCCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCAATGCCCTGGCTTGGAGACGACCTTGGCATGAAGGATGCCTCAAGTTCAGTCTTCCCTGGTTTTAGTTTGATGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCCCAATCTGGATTTATACCCCCATCCATGCTTTCATCCAATGCACTGCATGGTAACCTTACCACTGATGATCCATCCAAATTATTGAGCTTTCAAGCTCCTGTCCTCTCTTCACCAAATCTTCAATTTAACAAACCTAATTTAGCAAACCAAGTCAACCAATTGCAACAATCCCCAACGTCATGGTCTCCGCAGCAGCAGCAGCAGCAACAACAGCAGAAGCTGCAGTCAATGTTGCAAACACCCTTAAATCCGCTCCAGCAACAGAGGCAACAACAGCTGCCCGTACCACAAAACCTGCCACAACCACAGCAACAACAACCCCAAATGCCTCAACAGAGAGCGCAACAGCCACAAGAACAGCAACAGCAGTCGTGTCAACAGACCATCATGAATAACGGGGCAGTTGCTTCTAACCAGATTCCGAATCAGTGTGTACAGCAACCAGTATCATACTCACAACTTCAGCAACAGCAATTAATCTCAGGAAGTATCCCACCCCAACAATGTTTTCCATCGCCCAATAAGAATACATTGCTGATGACATCCTTACCACAAGACTCACAGTTTCAGCAACAAATAGATCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCTGCAGCAGCAGCAGCAACAGACACAGTTGCAATCATCTCCGTTGCAGTTATTGCAACAAAGCTTGTCACAGAGGGCACCACAGCAACCACAAATGACTCAAATGTCACAGCAAAACAGCTCAGACCAACAACCACAGTTACAGATGCTACAGAAATTGCAGCAGCAACAACAGCAGCAGCAGCAGCAACAACAACAGAAACCCCTTTCCACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAGCAAAATACTCATCAACAAAACCAGCAATTTCCGCAGCTGCCTCTATCACAGGGTCATCAGCCTCAACAGCTTGGCAACAATGCTTTCTCAATGGAGAAGCTTCTCAATGGCAACAACTACTCTTCTTCATCTCTGATGCAAACACAGCAGCTTTCGGTGAACCAACCCCATAATACACAGAAATCACTAACTAATACTAGAGCTCCCTCTACTCTTACAGATGGAGATGCCCCATCATGCTCAACTTCACCATCTACTAATAACTGCCAGATATCTCCGAATCTGATGAAAAGAAATCAACAAGTATCAGCCACATTAGGAGGACCTTCGGTAGTTGAACCCACCAATCATCTGATGCAGGAGCTTCATAGCAAGTCTGAGATGCAGATCAAACATGAATTGCCCAGTGTAAGAGGAACTGATCAGCTGAAGTTCAAAGGGACTGTTGCTGATCAGATGGAAGCTTCTTCTGGAACATCTTACTGTATTGATCCTAATAATATCCACCAGAACTTCCCACTTCCCAACTTCTGCATGGATGGGGATGTCCAATCACACCCAAGAAATAATTTTCCATTTGCCTCTAATCTCGATGGATTAACACCTGATACTTTGCTCTCAAGAGGCTATGATTCTCAGAAAGATTTTCAAAACTTGCTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCCTTAGTCCACAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCAAGTGATATTGCCATCAATGATCCTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAGACTCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTCGGATGTTTGGAATTGAAGGACAGCTAGAAGATCCTCAAAGGACCGAGTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTTCTGAGGTACAGCAAATGAGCTTGGATGGGGATTTAGGTCATGTTCCTGTCCCAAATCAAGCTTGTAGTGGAACAGATAATGGCAATGCGTGGAGGGGACAGTATGATGATAATTCTGCAGCCTCATTTAATCGATAA 3378 0.444 MKAPPNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSVVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEALLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALFNQVSLGMRFRMMFETEESGVRRYMGTITGITDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDLGMKDASSSVFPGFSLMQWMSMQQNNQFSAAQSGFIPPSMLSSNALHGNLTTDDPSKLLSFQAPVLSSPNLQFNKPNLANQVNQLQQSPTSWSPQQQQQQQQQKLQSMLQTPLNPLQQQRQQQLPVPQNLPQPQQQQPQMPQQRAQQPQEQQQQSCQQTIMNNGAVASNQIPNQCVQQPVSYSQLQQQQLISGSIPPQQCFPSPNKNTLLMTSLPQDSQFQQQIDQQASLLQRQQLQQQQQQTQLQSSPLQLLQQSLSQRAPQQPQMTQMSQQNSSDQQPQLQMLQKLQQQQQQQQQQQQQKPLSTSSPLLQSQLLQQQNTHQQNQQFPQLPLSQGHQPQQLGNNAFSMEKLLNGNNYSSSSLMQTQQLSVNQPHNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPNLMKRNQQVSATLGGPSVVEPTNHLMQELHSKSEMQIKHELPSVRGTDQLKFKGTVADQMEASSGTSYCIDPNNIHQNFPLPNFCMDGDVQSHPRNNFPFASNLDGLTPDTLLSRGYDSQKDFQNLLSNYGGAPRDIETELSTAALSPQPFGVPDMPFKPGCSSDIAINDPGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSSEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0610 1125 Gene3D - 289 360 - -
Gso9g0610 1125 PANTHER AUXIN RESPONSE FACTOR 19 1 1113 - -
Gso9g0610 1125 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Gso9g0610 1125 MobiDBLite consensus disorder prediction 768 811 - -
Gso9g0610 1125 CDD B3_DNA 125 217 IPR003340 GO:0003677
Gso9g0610 1125 SUPERFAMILY CAD & PB1 domains 1012 1076 - -
Gso9g0610 1125 Pfam AUX/IAA family 995 1085 IPR033389 -
Gso9g0610 1125 Gene3D - 123 227 IPR015300 -
Gso9g0610 1125 MobiDBLite consensus disorder prediction 1103 1125 - -
Gso9g0610 1125 SMART B3_2 126 228 IPR003340 GO:0003677
Gso9g0610 1125 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Gso9g0610 1125 ProSiteProfiles PB1 domain profile. 998 1091 IPR000270 GO:0005515
Gso9g0610 1125 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1113 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso9g0610 1125 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gso9g0610 1125 MobiDBLite consensus disorder prediction 656 742 - -
Gso9g0610 1125 MobiDBLite consensus disorder prediction 484 557 - -
Gso9g0610 1125 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso9g0610 1125 Gene3D - 993 1087 - -
Gso9g0610 1125 Coils Coil 682 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0610 Gso-Chr9 7356063 7364079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0610 1 488 B3 DNA Binding Superfamily AT1G19220 82.992 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso9g0610 AUX_IAA 4.6e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0610 K14486 - gmx:100804628 1853.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1492 15 17533345 17541419 Gso9g0610 9 7356063 7364079 GST
Gso13g0824 13 22536567 22544034 Gso9g0610 9 7356063 7364079 PCT
Gso17g0388 17 3565215 3573241 Gso9g0610 9 7356063 7364079 PCT
Gso9g0610 9 7356063 7364079 Gso13g0824 13 22536567 22544034 PCT
Gso9g0610 9 7356063 7364079 Gso17g0388 17 3565215 3573241 PCT