Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0609 ATGGCCAGCGCTCAGCTCTCAGCAATATCTTCGTCGATCTCTACGGCGTCGTTTGAAGGGCTTCGACCTTCGGCTGTTCAGTTTGCTTCCGCGGGCAGAATTAGAATTGGCAATCTCTCCCAAAGGTCTTTCCGGGGCTTGGTTGTCAAAGCCGCCACCGTTGTTGCCCCCAAATACACCGCGATTAAGCCTCTGGGAGACAGAGTGCTGATAAAAATTAAGGAAGCAGAGGAGAAAACTGAGGGTGGGATTTTGCTTCCATCAACTGCTCAAACGAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGAAAGACAATTGGGAAGAACAATGTAGAGATTAGTGTGAAGACTGGTGCACAAGTTGTGTATTCGAAGTATGCAGGTACTGAGGTGGATTTCGATGGTACAAAGCATCTTATTGTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTTGCTGAAGCTGAGGAAAAAACCTCTGGCGGTTTGTTGCTTACAGAGGCAACCAAGGACAAACCTTCGATTGGAACAGTGATAGCGGTTGGGCCGGGGCATCTGGACGAGGAAGGCAACAGAAAACCTTTGTCCGTGACTCCTGGGAACACAGTTTTGTACTCCAAATATGCTGGAAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTACCTTGAGAGTCTCAGATGTCATGGCTGTTCTCTCCTAG 762 0.4738 MASAQLSAISSSISTASFEGLRPSAVQFASAGRIRIGNLSQRSFRGLVVKAATVVAPKYTAIKPLGDRVLIKIKEAEEKTEGGILLPSTAQTKPQGGEVVAVGEGKTIGKNNVEISVKTGAQVVYSKYAGTEVDFDGTKHLIVKDDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTSGGLLLTEATKDKPSIGTVIAVGPGHLDEEGNRKPLSVTPGNTVLYSKYAGNDFKGKDGSDYITLRVSDVMAVLS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0609 253 Pfam Chaperonin 10 Kd subunit 62 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 Pfam Chaperonin 10 Kd subunit 160 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 SUPERFAMILY GroES-like 159 252 IPR011032 -
Gso9g0609 253 SMART Cpn10_2 159 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 SMART Cpn10_2 61 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 Hamap Co-chaperonin GroES [groES]. 159 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 ProSitePatterns Chaperonins cpn10 signature. 160 184 IPR018369 GO:0005524|GO:0006457
Gso9g0609 253 PIRSF Cpn21 1 253 IPR017416 GO:0006457|GO:0046914|GO:1901671
Gso9g0609 253 CDD cpn10 62 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 Hamap Co-chaperonin GroES [groES]. 61 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 SUPERFAMILY GroES-like 60 153 IPR011032 -
Gso9g0609 253 ProSitePatterns Chaperonins cpn10 signature. 62 86 IPR018369 GO:0005524|GO:0006457
Gso9g0609 253 PANTHER GROES CHAPERONIN 1 253 - -
Gso9g0609 253 CDD cpn10 160 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 Gene3D GroES chaperonin 54 154 IPR037124 GO:0006457
Gso9g0609 253 Gene3D GroES chaperonin 155 253 IPR037124 GO:0006457
Gso9g0609 253 PRINTS 10kDa chaperonin signature 62 77 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 PRINTS 10kDa chaperonin signature 84 105 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 PRINTS 10kDa chaperonin signature 118 130 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso9g0609 253 PRINTS 10kDa chaperonin signature 139 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0609 Gso-Chr9 7341606 7345097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0609 1 253 Calmodulin-binding Proteins AT5G20720 75.000 1.61e-134 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0609 K04078 - gmx:100803033 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1491 15 17504536 17508037 Gso9g0609 9 7341606 7345097 GST
Gso13g0823 13 22533571 22535960 Gso9g0609 9 7341606 7345097 PCT
Gso17g0389 17 3573701 3575996 Gso9g0609 9 7341606 7345097 PCT
Gso9g0609 9 7341606 7345097 Gso13g0823 13 22533571 22535960 PCT
Gso9g0609 9 7341606 7345097 Gso17g0389 17 3573701 3575996 PCT