Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0608 ATGGTGAAGCCGAAGAGCGTGGAGAAACCCGCAGAGGAACAACAACAACGAAGTGTTTCATCGTACAGAGGAGTACGGAAGAGGAAGTGGGGGAAGTACGTGTCGGAAATTAGGTTACCCAACAGCCGTCAAAGGATTTGGTTGGGTTCCTATGACAGCGCCGAGAAGGCGGCACGCGCGTTCGACGCTGCCATGTTCTGCTTACGTGGCAGCGGCGCCAAATTTAATTTCCCGAGTGACCCACCCAACATCGCCGGCGGGGGGAACATGACCTCCTCCCAGATTCAGATCGCGGCGGCGCGTTTCGCCAATTCGGAGCCCCGAAATGAGCGTTCGGATCAACCCGTGGAGTCTTTAACTTCGGATGAGGAAACGGCATCGTTTCCGGTCATTTCGGATACGGATACATCATCTCCTCCTCTCTCAGACGTGACGTTCCAAAACGACGCCGAATTAGTGACTGGGTCGTTCCCTGATATGTTTTCGGATTTCGGGTCGGGCGATTTTGTGCCCGATTTCTCCGATTTTCCGAGCTTCGACGATTTCAGCCGGGACTTCTTCTTGCATGAACTTCCGGGTTTCAATTTCGGAGAAGAGAACTTGGATGGATTGATAATTCAGGACTCGTTCTTGTGGAATTTCTAA 645 0.524 MVKPKSVEKPAEEQQQRSVSSYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGAKFNFPSDPPNIAGGGNMTSSQIQIAAARFANSEPRNERSDQPVESLTSDEETASFPVISDTDTSSPPLSDVTFQNDAELVTGSFPDMFSDFGSGDFVPDFSDFPSFDDFSRDFFLHELPGFNFGEENLDGLIIQDSFLWNF* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0608 214 MobiDBLite consensus disorder prediction 1 24 - -
Gso9g0608 214 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Gso9g0608 214 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Gso9g0608 214 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Gso9g0608 214 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Gso9g0608 214 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Gso9g0608 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 214 - -
Gso9g0608 214 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 5 214 - -
Gso9g0608 214 MobiDBLite consensus disorder prediction 119 141 - -
Gso9g0608 214 MobiDBLite consensus disorder prediction 103 141 - -
Gso9g0608 214 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Gso9g0608 214 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Gso9g0608 214 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0608 Gso-Chr9 7313438 7314566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0608 20 214 AP2-EREBP Transcription Factor Family AT1G19210 47.059 5.90e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso9g0608 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0608 - - gmx:100802508 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1489 15 17429389 17430495 Gso9g0608 9 7313438 7314566 GST