Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0577 ATGGACAGTGGAGGACACTACAACCCCCGCACCGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGATGTTGAGGAATTTTACCAGCAGTGTGATCCTGAAAAGGAGAATTTATGTCTGTATGGATTCCCCACTGAACAATGGGAAGTAAATTTGCCTGCTGAAGAAGTTCCCCCAGAACTTCCCGAGCCAGCACTGGGCATAAATTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTATCTTTAGTTGCTGTACACAGTGATGCATGGCTACAATCAGTGGCTTTCTACTTTGGGGCAAGATTTGGTTTTGATAAAGCTGACAGAAAGCGCCTGTTCACTATGATTAATGATTTGCCTACAATATTTGAGGTTGTAACTGGATCTGCAAAGAAACAGACAAAGGAGAAGTCATCAGAGAACAATGGCAACAAATCAAAGTCCAGTTCAAAAGGGCGAGGATCTGAACCCCCAAAGTATTCAAAGCAAGTGAAGGATGAGGAGGAGGGATTGGACGAAGAAGACGATGACGAGCATGGGGAGACCTTGTGTGGAGCATGTGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGCGACATATGTGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCCCGGGCTGAGCACATCAAACACTACAAGTGCCCCTCATGCAGCAATAAGAGACCAAGGCCTTGA 747 0.4726 MDSGGHYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLQSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAKKQTKEKSSENNGNKSKSSSKGRGSEPPKYSKQVKDEEEGLDEEDDDEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRPRP* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0577 248 CDD PHD_AL_plant 194 244 IPR044104 -
Gso9g0577 248 PANTHER CPG BINDING PROTEIN 3 248 IPR045104 GO:0006355|GO:0042393
Gso9g0577 248 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Gso9g0577 248 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 248 - -
Gso9g0577 248 SMART PHD_3 194 242 IPR001965 -
Gso9g0577 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
Gso9g0577 248 Pfam PHD-finger 195 244 IPR019787 -
Gso9g0577 248 SUPERFAMILY FYVE/PHD zinc finger 184 246 IPR011011 -
Gso9g0577 248 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gso9g0577 248 MobiDBLite consensus disorder prediction 141 189 - -
Gso9g0577 248 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0577 Gso-Chr9 6812943 6816780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0577 7 247 Alfin-like Transcription Factor Family AT3G42790 76.446 8.34e-124 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso9g0577 Alfin 2.6e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0577 - - gmx:100170699 481.1