Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0576 ATGCCTAACTTGAACCCAACACTTCAAGTACTTGCTTCTTCATACCCTTACCAGATCCCAAAGGCTCATTCTTCTTATCCCTACGGCGATCCAATTTTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGATACCCCCGATGCTGGGACTAGCATCCACCAGAGTGGCTTTGCCACTTGATCTTGCAGAAGATGGACCAATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGTCAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAATCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCCGGGGGGCGATTTCTCAGCACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACTGGTGCACATTCTGGTTCTGACCCTACCAACAGATATCAAAAGGAACATCTATCAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATTCATCTTTCATCACAACCTGCTCCGACCGGCCATGTTTATCTGGCAACAATGTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGGGTGGATCACCACAGTTCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAGCGCACATCAGTTGTCCGGTGA 675 0.4667 MPNLNPTLQVLASSYPYQIPKAHSSYPYGDPIFAYGPQAISHPQMIPPMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNRYQKEHLSEVESHSSKDGDNSSFITTCSDRPCLSGNNVNFRQQECMFLGNSANMGGSPQFSGGLTFGGAKQRTSVVR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0576 224 MobiDBLite consensus disorder prediction 146 163 - -
Gso9g0576 224 ProSiteProfiles NF-YA/HAP2 family profile. 65 125 IPR001289 GO:0003700|GO:0006355
Gso9g0576 224 SMART cbf3 64 125 IPR001289 GO:0003700|GO:0006355
Gso9g0576 224 Gene3D - 65 127 - -
Gso9g0576 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 12 218 - -
Gso9g0576 224 ProSitePatterns NF-YA/HAP2 subunit signature. 70 90 IPR018362 GO:0003677|GO:0016602
Gso9g0576 224 MobiDBLite consensus disorder prediction 137 169 - -
Gso9g0576 224 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 68 122 IPR001289 GO:0003700|GO:0006355
Gso9g0576 224 PRINTS CCAAT-binding transcription factor subunit B signature 68 90 IPR001289 GO:0003700|GO:0006355
Gso9g0576 224 PRINTS CCAAT-binding transcription factor subunit B signature 99 122 IPR001289 GO:0003700|GO:0006355
Gso9g0576 224 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 218 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0576 Gso-Chr9 6793602 6797613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0576 21 131 CCAAT-HAP2 Transcription Factor Family AT1G17590 62.712 5.97e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso9g0576 CBFB_NFYA 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0576 K08064 - gmx:100793856 416.387