Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0572 ATGGGCGATGTTCTAAGCCCCTTCACAATCTCATCCCCTCCTCCACCCTCCTCCCCATCAACCAAGAACAACAGCATGCCCATGTTGTACTACGGTCTCGTGGTGGTCGGAACCGCGGCCATAGTGCTAGCCATATACAACCTCGTCCTCCTAAGACGGAGCCAAACGCGCCACGCGCGGCCGGCGCAAAGTATCACGCATAATAGAGATATTGTACAAGTTGTTTCCGAAAGAACAAGGAGCTTCGAGGACAGCCAACAACGAAACTTGTTGTCGAGCTTCAAGTACAAGAAAGAAGTAGTGGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAAGATGATGAGTTTGAGTGCTCCGTTTGCTTATCGGTTTACGAAGAAGGCGAAGAGGTGAGAAAGCTTCCACAGTGCAAGCACTATTTCCACGTTCTTTGCATAGACATGTGGCTTTACTCCCACTTGGATTGCCCAATTTGTAGAACTCCCGTTGATGTTTTGTGTCCGGGGGAGAATTCTCCTGATGGGATGATGGAATCCGGTGCTGGAATGGCAGCATCTCTCTAG 567 0.4921 MGDVLSPFTISSPPPPSSPSTKNNSMPMLYYGLVVVGTAAIVLAIYNLVLLRRSQTRHARPAQSITHNRDIVQVVSERTRSFEDSQQRNLLSSFKYKKEVVAKEEEEEEEEEQDDEFECSVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLYSHLDCPICRTPVDVLCPGENSPDGMMESGAGMAASL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0572 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 166 IPR013083 -
Gso9g0572 188 SMART ring_2 119 160 IPR001841 -
Gso9g0572 188 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Gso9g0572 188 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 172 - -
Gso9g0572 188 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 172 IPR044675 -
Gso9g0572 188 Pfam Ring finger domain 118 161 IPR001841 -
Gso9g0572 188 MobiDBLite consensus disorder prediction 1 23 - -
Gso9g0572 188 SUPERFAMILY RING/U-box 109 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0572 Gso-Chr9 6721653 6722219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0572 20 164 C3H Transcription Factor Family AT1G04360 31.333 4.76e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0572 - - gmx:102662517 335.88