LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso9g0558	ATGCGTGTGTGTGTTTTTTTTGGAGCCTCTCTCAATTTGTGTTCACAATTCACAAACCAGAAAGAAAAGAGAGAGAAAAGAAAAGAAAAGAAAAAAAAAGGGGTTAGAAGGGGAATGGAGAATCAAAAGGCGGGGGAATCGGTGCATGTGAGGGAGGAGGAGGATGACGTGGCGGTGGAGGAAGAGGAGGAACAACAAGGAGATGTTGATGTTGGTTCCAGCATGACCTTGGAGAGGGTCGCTGCAGCTAAGAAATTCATTGAGAATCATTACAGGTCTCAGAGGAAGCACATCCAAGAACGCAAGGAGAGGCGGTTAATGCTAGAGAAGAAGTTAGCATCTTCTCAAGTACCAGAAGATGAACAGATCAATCTATTGAAGGATTTAGAGCTCAAGGAAACCGAGTATATGCGGTTAAAAAGACATAAAATATGTGTTGATGATTTTGACCTTCTAACCATTATTGGCAGGGGAGCCTTTGGGGAGGTAAGGCTTTGCCGTGAAAAGAAATCAGGTAATATATATGCCATGAAAAAGTTGAAAAAGTCTGAAATGCTCAGCAGGGGACAGGTTGAGCATGTTAGAGCTGAAAGGAATGTACTTGCAGAAGTTGCGTGTGACTTCATTGTGAAACTCTATTACTCTTTTCAAGATGCTGAACACTTATATCTCATAATGGAATATTTGCCTGGTGGTGATATAATGACTTTGTTGATGAGGGAAGAAACTTTGACTGAAACTGTGGCTAGATTTTACATTGCTGAAAGCGTTATTGCCATAGAGTCTATTCATAAACATAACTACATTCATCGAGATATAAAACCTGACAACCTTCTATTGGACCAATATGGTCACATGAAGCTGTCTGATTTTGGTCTTTGCAAGCCACTTGACTGCTCAAGTCTATCATCTATTAGTGAAAATGAAATCCTGGATGATGAGAACTTGAACGATACCATGGATGTTGATGGAGCCTTGCCAAATGGCAGAAATGGTAGGCGCTGGAAAAGTCCCCTTGAACAACTTCAACATTGGCAAATTAACAGGAGGAAGTTGGCATTTTCCACTGTTGGAACTCCAGACTATATTGCTCCTGAAGTACTACTGAAAAAGGGTTATGGTGTGGAGTGCGACTGGTGGTCTCTTGGTGCTATAATGTATGAAATGCTAGTTGGATATCCTCCGTTTTACTCTGATGATCCTGTATCAACATGCAGAAAGATTGTGCATTGGAAAAATCACTTGAAATTTCCAGAGGAGGTCAGATTGACACCCGAAGCCAAGGATCTAATATGCAGGTTGCTTTCCGGTGTGCCACATAGGCTTGGTACTAGAGGAGCAGAAGAAATTAAAGCTCATCCTTGGTTCAAAGATGTCATGTGGGACAGGCTCTATGAAATGGAGGCAGCATTTAAACCACAAGTCAATGGAGAGCTTGACACTCAGAATTTTATGAAATTTGATGAGGTTGAACAACCAAAATCAACTAGATCTGGATCTGGACCCTTCAGAAAGAAGCTCTTAACTTCTCAAGATCTCAGTTTTGTTGGTTATACATATAAGAATTTTGCTGCTGTCAAGGGGATGATGCACCAATCTATTAATGGCGATACAGATCCAGGGAGCTTGTCACCAAAACGGACATCTGTGGATTCCACGCAGAGTGATTCTGGAGTAAGCTATTCCGCCTGA	1692	0.4155	MRVCVFFGASLNLCSQFTNQKEKREKRKEKKKKGVRRGMENQKAGESVHVREEEDDVAVEEEEEQQGDVDVGSSMTLERVAAAKKFIENHYRSQRKHIQERKERRLMLEKKLASSQVPEDEQINLLKDLELKETEYMRLKRHKICVDDFDLLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVACDFIVKLYYSFQDAEHLYLIMEYLPGGDIMTLLMREETLTETVARFYIAESVIAIESIHKHNYIHRDIKPDNLLLDQYGHMKLSDFGLCKPLDCSSLSSISENEILDDENLNDTMDVDGALPNGRNGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVSTCRKIVHWKNHLKFPEEVRLTPEAKDLICRLLSGVPHRLGTRGAEEIKAHPWFKDVMWDRLYEMEAAFKPQVNGELDTQNFMKFDEVEQPKSTRSGSGPFRKKLLTSQDLSFVGYTYKNFAAVKGMMHQSINGDTDPGSLSPKRTSVDSTQSDSGVSYSA*	564

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso9g0558	563	ProSitePatterns	Protein kinases ATP-binding region signature.	155	178	IPR017441	GO:0005524
	Gso9g0558	563	Pfam	Protein kinase domain	349	456	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso9g0558	563	Pfam	Protein kinase domain	151	300	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso9g0558	563	PANTHER	SERINE/THREONINE-PROTEIN KINASE	57	562	-	-
	Gso9g0558	563	Gene3D	Transferase(Phosphotransferase) domain 1	355	474	-	-
	Gso9g0558	563	MobiDBLite	consensus disorder prediction	19	69	-	-
	Gso9g0558	563	SMART	pkinase_C_6	457	522	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Gso9g0558	563	Gene3D	Phosphorylase Kinase; domain 1	475	485	-	-
	Gso9g0558	563	SUPERFAMILY	Protein kinase-like (PK-like)	132	501	IPR011009	-
	Gso9g0558	563	Gene3D	Phosphorylase Kinase; domain 1	147	228	-	-
	Gso9g0558	563	PANTHER	AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN	57	562	-	-
	Gso9g0558	563	ProSiteProfiles	AGC-kinase C-terminal domain profile.	457	530	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Gso9g0558	563	Gene3D	Transferase(Phosphotransferase) domain 1	229	296	-	-
	Gso9g0558	563	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	268	280	IPR008271	GO:0004672\|GO:0006468
	Gso9g0558	563	ProSiteProfiles	Protein kinase domain profile.	149	456	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso9g0558	563	CDD	STKc_NDR_like	147	521	-	-
	Gso9g0558	563	SMART	serkin_6	149	456	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso9g0558	563	MobiDBLite	consensus disorder prediction	35	54	-	-
	Gso9g0558	563	MobiDBLite	consensus disorder prediction	535	563	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso9g0558	Gso-Chr9	6381262	6392242	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso9g0558	39	540	AGC Kinase Gene Family	AT2G19400	73.663	0.0	766

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Gso9g0558		Pkinase	8.2e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso9g0558	K08790		-	gmx:100802177	1087.02

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso15g1419	15	15777487	15788965	Gso9g0558	9	6381262	6392242	GST