Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0551 ATGGAACCTCGTATTGGGAATAAGTTTCGGCTTGGCCGTAAGATCGGTAGCGGATCGTTTGGAGAGATCTATTTAGGTACTAATAATCAAACCAATGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACAAAACATCCTCAGTTGCTATATGAGTCCAAGTTGTACAGAGTTCTCCAGGGAGGAACTGGAATTCCAGATGTTAGATGGTTTGGAGTGGAGGGGGATTACAATGTTCTAGTAATGGATCTACTTGGACCTAGTCTTGAAGATCTATTTAACTTCTGCAGTAGAAAGCTCTCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTTGTTCATTCTAAATCGTTTTTACATCGGGATATCAAACCAGATAATTTTCTCATGGGCTTGCGAAGGCGGGCAAACCAGGTTTACTGTATTGATTTTGGTCTGGCGAAGAAATATAGAGATAGTTCAACCCATCAACACATTCCTTACAGGGAAAATAAGAATTTAACTGGGACTGCTAGATATGCGAGTATGAATACCCACCTTGGCATTGAGCAAAGTCGGAGAGATGATTTGGAGTCTCTTGGTTATGTCTTGATGTATTTCTTGAGAGGAAGTCTCCCTTGGCAAGGACTTAAAGCTGGAACAAAGAAACAAAAGTATGAGAGAATTAGTGAAAAAAAGGTTTCTACCTCAATTGAGGCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCATACTTCCATTACTGCCGCTCATTAAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAAAGAATATTTCGTGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGATTGGACAATCTTGAAGTATCAGCAATCACAGCTAGCTGCTCCTCCAGCACGTGCCATTGGTCCTAATGTTGGAACTAGTTCAGCATTGCCACCAGCTGTGACTAATGCTGATAGACAGACAGGAGAGGAAGAAGGGCGACCTCCTGGTCTGGTTTCAGGGGATTCCACAAGGCGAAGAATGACAGGGCCCATCCCAAACTCTGTAAACATTTCAAAGCAGAAAAATCCAGTCACCACGGATGCTGCCCTTAATAAGGAAGCCATGTTATCGAGGCCCAATGTCTTGGGCCAGTCAAGTGGATCAAGACGAGCTGCTGTTTCTAGTAGTCGTGATGCATTTGTTGGTTCTGATTTGGATCTTCGTACTCGTACTACTGAAACTAACCCTGGAACAGCGCCCAAAACATCATCTGTAAGAAATGCTTCTCATGTCAAGAGCTATGAAACTGCAGTCAAGGGCATTTGA 1332 0.4234 MEPRIGNKFRLGRKIGSGSFGEIYLGTNNQTNEEVAIKLENVKTKHPQLLYESKLYRVLQGGTGIPDVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLRRRANQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLAAPPARAIGPNVGTSSALPPAVTNADRQTGEEEGRPPGLVSGDSTRRRMTGPIPNSVNISKQKNPVTTDAALNKEAMLSRPNVLGQSSGSRRAAVSSSRDAFVGSDLDLRTRTTETNPGTAPKTSSVRNASHVKSYETAVKGI* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0551 443 MobiDBLite consensus disorder prediction 311 365 - -
Gso9g0551 443 MobiDBLite consensus disorder prediction 380 395 - -
Gso9g0551 443 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0551 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gso9g0551 443 MobiDBLite consensus disorder prediction 378 443 - -
Gso9g0551 443 PANTHER CASEIN KINASE-RELATED 1 438 - -
Gso9g0551 443 Gene3D Transferase(Phosphotransferase) domain 1 1 309 - -
Gso9g0551 443 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0551 443 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gso9g0551 443 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0551 443 MobiDBLite consensus disorder prediction 348 365 - -
Gso9g0551 443 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso9g0551 443 MobiDBLite consensus disorder prediction 409 433 - -
Gso9g0551 443 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 438 IPR030509 GO:0004672|GO:0005524
Gso9g0551 443 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0551 Gso-Chr9 6250244 6256556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0551 7 223 EF-hand Containing Proteins AT2G17890 25.333 8.44e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso9g0551 Pkinase 8.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0551 K02218 - gmx:100786777 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1413 15 15663969 15676150 Gso9g0551 9 6250244 6256556 GST
Gso13g0764 13 21973179 21979339 Gso9g0551 9 6250244 6256556 PCT
Gso17g0449 17 4066613 4072908 Gso9g0551 9 6250244 6256556 PCT
Gso9g0551 9 6250244 6256556 Gso13g0764 13 21973179 21979339 PCT
Gso9g0551 9 6250244 6256556 Gso17g0449 17 4066613 4072908 PCT