Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0546 ATGAACTTCAGAAGCGGCTCCTCGGATTCAAAGGACGCCAGTAACAGCAGCACCGGCGAGGCCTATTTGAGCGGCGTTTCGGACGTCATCACGCCGCTGAGGCGCCTCTCGGAGCAGCTCGGGTCAATATTAGATGGCGGGGGGGTTGACTTTTTCTCCGACGCCAAGATCGTGGCCGGAGACGGCCGGGAAGTGGCGGTGAACCGGTGCATTCTGGCGGCCAGGAGCGGCTTCTTCAAGCATGTCTTCGCCGGTGGTGGCGGCTGCGTGCTCCGGCTGAAGGAAGTGGCCAAGGACTACAACGTGGGGTTGGAGGCGCTTGGGATTGTTTTGGCTTATTTGTATAGTGGAAGAGTGAAGCCTTTGCCTCAAGGTGGTGTTTGTGTTTGTGTGGATGATGTGTGTTCACATTTTGGGTGTAGGCCTGCTATTGATTTCTTGCTTCAGCTTCTCTATGCATCCTCCACTTTTCAGCTCAATGAGTTGATTGCTCTTTAGCAGGGACATCTACTAGACATTCTTGAAAAGGTGGCAATAGATGATATTTTGGTGGTTCTATCGGTCGCAAATATATGTGGCATAGTGTGTGAAAGACTACTAGCAAGGTGCACTGAGATGATACTTAAATCTGATGCTGATATCACCACTCTTGAAAAGGCACTGCCTCAACATTTGGTGAAGCAAATCACAGATAAACGAATAGAACTGGACCTGTACATGCCCGAAAACTTCAATTTTCCTGACAAACATGTCAACAGAATACACAGGGCACTGGATTCGGACGATGTGGAACTGGTAAGATTGCTTTTGAAAGAGGGACACACAACTCTTGATGATGCTTATGCACTCCACTATGCTGTTGCATACTGTGATGTGAAGACCACCACTGAGCTTCTTGATCTTGGTCTTGCTGATGTGAACCACAAAAACTATAGGGGCTATAGTGTGCTGCATGTTGCTGCAATGAGGAAGGAGCCTAAGATTATAGTTTCTCTCTTGACTAAGGGGGCACAGCCTTCTGATCTCACTTTGGATGGAAGAAAAGCCCTTCAGATTTCGAAACGTCTCACCAAAGCTGTGGATTATTATAAGTCCACAGAGGAAGGAAAAGTTTCATGCAGTGACAGGTTGTGCATAGAGATATTGGAGCAAGCTGAGAGAAGGGAGCCTTTACTTGGAGAGGCATCTCTTTCTCTTGCTATGGCAGGGGATGATTTGCGCATGAAACTGTTGTACCTAGAAAATAGAGTTGGACTGGCGAAAGTGTTGTTTCCCATGGAAGCAAAGGTTATTATGGATATTTCTCAAATTGATGGCACATCTGAGTTTCCATCAACAGACATGTACTGTCCAAATATTAGTGATCACCAGAGGACAACTGTGGACTTAAACGATGCACCTTTCAGAATGAAGGAAGAACATCTAGTTAGGTTGAGAGCACTGTCTAGAACTGTGGAGTTGGGGAAACGCTTCTTCCCTCGATGCTCAGAAGTGTTGAACAAGATCATGGATGCTGATGACCTAACTCAGCTTACATGTATGGGTGATGACAGTCCCGAAGATCGACTAAGGAAGCGAAGAAGGTATGTGGAGCTCCAAGAAGTTCTGAATAAGGTCTTCAATGAGGACAAGGAGGAGTTTGATAGGTCTGCCATGTCATCATCATCCTCTTCTACATCAATTGGAGTAGTGAGACCTAATGCCAATCTAGCCATGAAGAACTAG 1725 0.4661 MNFRSGSSDSKDASNSSTGEAYLSGVSDVITPLRRLSEQLGSILDGGGVDFFSDAKIVAGDGREVAVNRCILAARSGFFKHVFAGGGGCVLRLKEVAKDYNVGLEALGIVLAYLYSGRVKPLPQGGVCVCVDDVCSHFGCRPAIDFLLQLLYASSTFQLNELIAL*QGHLLDILEKVAIDDILVVLSVANICGIVCERLLARCTEMILKSDADITTLEKALPQHLVKQITDKRIELDLYMPENFNFPDKHVNRIHRALDSDDVELVRLLLKEGHTTLDDAYALHYAVAYCDVKTTTELLDLGLADVNHKNYRGYSVLHVAAMRKEPKIIVSLLTKGAQPSDLTLDGRKALQISKRLTKAVDYYKSTEEGKVSCSDRLCIEILEQAERREPLLGEASLSLAMAGDDLRMKLLYLENRVGLAKVLFPMEAKVIMDISQIDGTSEFPSTDMYCPNISDHQRTTVDLNDAPFRMKEEHLVRLRALSRTVELGKRFFPRCSEVLNKIMDADDLTQLTCMGDDSPEDRLRKRRRYVELQEVLNKVFNEDKEEFDRSAMSSSSSSTSIGVVRPNANLAMKN* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0546 573 SMART BTB_4 53 174 IPR000210 GO:0005515
Gso9g0546 573 CDD BTB_POZ_NPR_plant 34 173 - -
Gso9g0546 573 Gene3D - 224 377 IPR036770 -
Gso9g0546 573 ProSiteProfiles BTB domain profile. 53 123 IPR000210 GO:0005515
Gso9g0546 573 SUPERFAMILY POZ domain 37 165 IPR011333 -
Gso9g0546 573 Pfam NPR1/NIM1 like defence protein C terminal 353 558 IPR021094 -
Gso9g0546 573 Pfam Domain of unknown function (DUF3420) 212 254 IPR024228 -
Gso9g0546 573 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Gso9g0546 573 SUPERFAMILY Ankyrin repeat 242 353 IPR036770 -
Gso9g0546 573 Pfam Ankyrin repeats (many copies) 281 325 IPR002110 GO:0005515
Gso9g0546 573 Gene3D Potassium Channel Kv1.1; Chain A 24 207 IPR011333 -
Gso9g0546 573 PANTHER REGULATORY PROTEIN NPR3 20 571 IPR044292 GO:0009862|GO:2000022|GO:2000031
Gso9g0546 573 PANTHER REGULATORY PROTEIN NPR2 20 571 - -
Gso9g0546 573 SMART ANK_2a 277 307 IPR002110 GO:0005515
Gso9g0546 573 SMART ANK_2a 248 276 IPR002110 GO:0005515
Gso9g0546 573 SMART ANK_2a 311 340 IPR002110 GO:0005515
Gso9g0546 573 Pfam BTB/POZ domain 51 121 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0546 Gso-Chr9 6175953 6179724 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso9g0546 NPR1_like_C 2.5e-88 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0546 K14508 - gmx:100800032 1099.35