Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0541 ATGCACCCCATGGAAAGCGTCTTCTCTCTCTCTGTTGCCGCAAGGGCTGATTTTATCCAATTTCTGGTGCAGTCTTTTGGCTGCAGTTACATTTGTCTATGGGCATATGATTCCATTTCACCAAATCGTTTGAGCTTCTTGGATGGTATCTACAATCTAAGGAACAACCAATCAAGTTCAAGTTTGGGGAGTGTGCAGGCACAACAGCTTTTCAGTCAGTTCCGGACTTTGACATTTGATATCAATGATGACCGTGTTCCTGGACTAGCTTTTCGGAATCAACGGTCATACCTTGAGCTCCAACAATTGGAACTTCTCAGACTAGCATCCACAGAAATACAAACACAATTTTTTCAGGAGGCAAGGATTAAGACTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAACAACACTTAGGAGTTTGTTTCCTGAAGATTTTTCCACTAGAGTACTGTCCCAGCAAATTGATCAAAACCCTCCAGCATCATCTTCATCTTCTCTGAGATCAATCTCCACAGGAAGCCCTGAATACTCATCACTTCTATTCAGTATTCCAGGAACTTCTCAACCCCACTTTTCACCTGAGACACTTGGAGCATCATCATCATCAAGACTAGTGCCACCAATGCAGCCAGTGCCAAATAGTCCTCACCAACAAGCCATTAATAATATTCAAGCATTGGCACAAGTCCCTTCTCTAACCCAATTCCCCACACCAGAAACTGAACATGATGCAATCATGAGAGCAATCCTCTATGTTATATCTCCAACAACTTCTCATCATCATCATAATCAACAGCACCAACAAAACTTGCCTTATAGTAGTAATAATTCTCTTCCTGTGGTGCATCCTGATGCTAGTGCATTCCAGAGGTATAGACAAGACTTAGGCTCCAACAACATGGTCTCCAATATTCTCAGAAGGCAAAGCCTCATGAAGAGATCTTTTGTGTTCTTTAGAAACTTGAATTTTATGAGAATGAGAGATCGCATTCAAGCAACGTCTCGTCCCACCAATACTCAGCTTCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAGCTAAACGAGAATTTTCAATCCCTTAGAGCACTTCTTCCTCCGGGAACAAAGAAAGACAAAGCGTCTATACTGATAGCAGCAAAGGAGACATTGAGCTCTTTGATGGCTGAAGTTGATAAACTGAGCAAAAGGAATCAAGGGTTGACGTCATTTTTGTCAGCCAAAGAATCTACAACTGAAGAAACCAAGGTAGCTAGTTTATCGCCAAATAAAAGATTAAGTGTCATAATTTCACATGTACCCGAATCAAGCTCATCAGAAGAGAGAATGGTGGAGTTGCAAGTGAATGTGAGAGGACAAGTTTCTCAAACTGATTTATTAATCCGGTTATTGGAATTCTTAAAACTGGCTCACCACGTGAGCTTGGTTTCCATGGACGCAAACACCCACGTTGCAGAAGGGAATAATGCACTACATCAACTATCCTTCAGATTGAGGATTATTCAGGGAAGTGAATGGGACGAGTCTTCCTTCGAGGAAGCAGTGAGAAGAGTAGTTGCTGACTTGCTACAGTACCAAATGGACCAATAA 1635 0.4159 MHPMESVFSLSVAARADFIQFLVQSFGCSYICLWAYDSISPNRLSFLDGIYNLRNNQSSSSLGSVQAQQLFSQFRTLTFDINDDRVPGLAFRNQRSYLELQQLELLRLASTEIQTQFFQEARIKTAVFMGCNKGEIELGFLNMSQVDIQTTLRSLFPEDFSTRVLSQQIDQNPPASSSSSLRSISTGSPEYSSLLFSIPGTSQPHFSPETLGASSSSRLVPPMQPVPNSPHQQAINNIQALAQVPSLTQFPTPETEHDAIMRAILYVISPTTSHHHHNQQHQQNLPYSSNNSLPVVHPDASAFQRYRQDLGSNNMVSNILRRQSLMKRSFVFFRNLNFMRMRDRIQATSRPTNTQLHHMISERRRREKLNENFQSLRALLPPGTKKDKASILIAAKETLSSLMAEVDKLSKRNQGLTSFLSAKESTTEETKVASLSPNKRLSVIISHVPESSSSEERMVELQVNVRGQVSQTDLLIRLLEFLKLAHHVSLVSMDANTHVAEGNNALHQLSFRLRIIQGSEWDESSFEEAVRRVVADLLQYQMDQ* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0541 544 Gene3D - 352 428 IPR036638 GO:0046983
Gso9g0541 544 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 537 - -
Gso9g0541 544 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 537 IPR044658 -
Gso9g0541 544 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 417 IPR036638 GO:0046983
Gso9g0541 544 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Gso9g0541 544 SMART finulus 359 408 IPR011598 GO:0046983
Gso9g0541 544 Pfam Helix-loop-helix DNA-binding domain 357 402 IPR011598 GO:0046983
Gso9g0541 544 Coils Coil 392 412 - -
Gso9g0541 544 CDD bHLH_AtbHLH_like 358 410 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0541 Gso-Chr9 6118974 6124382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0541 15 537 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.036 5.40e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso9g0541 HLH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0541 - - gmx:100798452 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1406 15 15511136 15516599 Gso9g0541 9 6118974 6124382 GST
Gso13g0761 13 21929103 21933004 Gso9g0541 9 6118974 6124382 PCT
Gso17g0454 17 4109508 4113085 Gso9g0541 9 6118974 6124382 PCT
Gso9g0541 9 6118974 6124382 Gso13g0761 13 21929103 21933004 PCT
Gso9g0541 9 6118974 6124382 Gso17g0454 17 4109508 4113085 PCT