Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0531 ATGATACCAACTTATCGTTACTCAGTGTCTTCGCCTATGCCTATAGATCTTAATGAAGATCACACCCACCACGTCTTCAGTACAAGCCATCAAGCCTCTTCTTCGTCTTCTTCTCTATCTTTTTCTATTCTCTTCAACCCGGATCATCAAGGTCAAGGAGGATCTTGTTGCCACTGGGAATCAAAGCACTTACAAAGTGATGAAGAGGCCCAGAAGATTGTTCCTTCTAGTGAATCATGGGAGCATCCAGTATCTGAAAAGGATGAAAACAGAAGTGATCTCAAGCTGAGAGTTTGGAAGAAAGAAGATAAGTGTGAAAATTTTCAAGTTGAAGATAATTCAACTAAGTGGATGCCTTTAAAGATGAGAATGATGCGGAGGATGATGGTGTCAGATCAAACGGGTTTTGATACAGAAGGCATGATCTCTAACTCTAAGCAGATCAAGAATGAAGAGAAAAACCCACCACTGACACCTCTAGGAACTGATGATAGTAATAACTACAATTCTTCTGCAAACCACAGCAAGATCACTGTTAGGGTTTGTTCTGATTGCCACACCACTAAGACCCCTCTCTGGAGAAGTGGACCAAAAGGTCCAAAGACACTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCAAGGCGTGCCATTGCCGTGGCTGCAACGGCAAACGGAATGAATCCAGTGGAGGCTGAGAAATCTCAAGTAAAGAAAGGAAACAAATTGCATAGCAAAGGGATGAAGTCCAAAACTAAGGGTGCACCACATATGAAAAAGAAGCGCAAACTTGGAGCGAAGTATAGAAAGAGGTTTGGTGCTTTTGAGGATTTGACAGTGAGATTGAGTAAGAACTTGGCTCTCCAAAAAGTCTTCCCTCCGGATGAGAAGGAGGCTGCAATCTTGCTCATGGCTTTATCTTATGGCCTTCTTCATGGCTTTCCCACAGATCGTTACGTCAATTACTTAGATTTATGA 978 0.4243 MIPTYRYSVSSPMPIDLNEDHTHHVFSTSHQASSSSSSLSFSILFNPDHQGQGGSCCHWESKHLQSDEEAQKIVPSSESWEHPVSEKDENRSDLKLRVWKKEDKCENFQVEDNSTKWMPLKMRMMRRMMVSDQTGFDTEGMISNSKQIKNEEKNPPLTPLGTDDSNNYNSSANHSKITVRVCSDCHTTKTPLWRSGPKGPKTLCNACGIRQRKARRAIAVAATANGMNPVEAEKSQVKKGNKLHSKGMKSKTKGAPHMKKKRKLGAKYRKRFGAFEDLTVRLSKNLALQKVFPPDEKEAAILLMALSYGLLHGFPTDRYVNYLDL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0531 325 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 313 - -
Gso9g0531 325 MobiDBLite consensus disorder prediction 231 263 - -
Gso9g0531 325 CDD ZnF_GATA 181 213 IPR000679 GO:0006355|GO:0043565
Gso9g0531 325 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 313 - -
Gso9g0531 325 MobiDBLite consensus disorder prediction 67 88 - -
Gso9g0531 325 Pfam GATA zinc finger 182 215 IPR000679 GO:0006355|GO:0043565
Gso9g0531 325 ProSiteProfiles GATA-type zinc finger domain profile. 176 212 IPR000679 GO:0006355|GO:0043565
Gso9g0531 325 Gene3D - 177 271 IPR013088 GO:0006355|GO:0008270
Gso9g0531 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 217 - -
Gso9g0531 325 MobiDBLite consensus disorder prediction 241 263 - -
Gso9g0531 325 ProSitePatterns GATA-type zinc finger domain. 182 207 IPR000679 GO:0006355|GO:0043565
Gso9g0531 325 SMART GATA_3 176 227 IPR000679 GO:0006355|GO:0043565
Gso9g0531 325 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0531 Gso-Chr9 5911273 5913635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0531 113 313 C2C2-Gata Transcription Factor Family AT4G26150 34.361 1.29e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso9g0531 GATA 7.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0531 - - gmx:100792098 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1391 15 15157199 15159298 Gso9g0531 9 5911273 5913635 GST
Gso13g0749 13 21795058 21797172 Gso9g0531 9 5911273 5913635 PCT
Gso17g0465 17 4203904 4206080 Gso9g0531 9 5911273 5913635 PCT
Gso9g0531 9 5911273 5913635 Gso13g0749 13 21795058 21797172 PCT
Gso9g0531 9 5911273 5913635 Gso17g0465 17 4203904 4206080 PCT