Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0527 ATGGAAGATGATGAGGCATGCATCACGAGTCTGAGCCTTGGACTTGGAATAATGGGAGGGCATGCTCAAAAGAAGGAGAATGAGCAGAAAGTTCATTGCTTGGACCTATCCTTTGAGCTTTGTCCAAAAGGGAAAGAAGAAGTAGAAGAAGCCATTGACGTGGATCAACAACAACAACAACATGCTAATAAGGCAAAAGGGTTGTTGTGTTTGAAGCACCCTAATGATGAAACAAGCCCTGATAGCAACAATAGCAATAACGGTAGCAGAAAGAAACTGAAGCTCACAAAGGAGCAATCAGCCACCCTTGAAGATATTTTCAAGCTGCATAGCACTCTTAACCCCGCACAGAAACAGGCACTTGCTGAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTAACAGATGAAAATCAAAGGCTGAAGAAGGAGTTGCAAGAGCTGCGTGCACAAAAGATTGGACCAACACCATTATACATTCAACTCTCCAAGGCCACAACCTTGACCATTTGTTCATCTTGTGAGAAACTGTTGAAGCCAAATGAAGGGAACAACAAAGGAGCCATTTCCAATGTGATCCGAAACAGTAGCAACAAATTGAAGAACAGCATAGAGTTAGGGGGTATCTAG 714 0.4272 MEDDEACITSLSLGLGIMGGHAQKKENEQKVHCLDLSFELCPKGKEEVEEAIDVDQQQQQHANKAKGLLCLKHPNDETSPDSNNSNNGSRKKLKLTKEQSATLEDIFKLHSTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENQRLKKELQELRAQKIGPTPLYIQLSKATTLTICSSCEKLLKPNEGNNKGAISNVIRNSSNKLKNSIELGGI* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0527 237 CDD homeodomain 90 147 IPR001356 GO:0003677
Gso9g0527 237 SMART HOX_1 88 150 IPR001356 GO:0003677
Gso9g0527 237 SUPERFAMILY Homeodomain-like 77 147 IPR009057 -
Gso9g0527 237 Coils Coil 145 179 - -
Gso9g0527 237 Pfam Homeobox associated leucine zipper 146 179 IPR003106 GO:0006355|GO:0043565
Gso9g0527 237 Pfam Homeodomain 90 144 IPR001356 GO:0003677
Gso9g0527 237 MobiDBLite consensus disorder prediction 76 90 - -
Gso9g0527 237 SMART halz 146 189 IPR003106 GO:0006355|GO:0043565
Gso9g0527 237 MobiDBLite consensus disorder prediction 71 95 - -
Gso9g0527 237 Gene3D - 69 145 - -
Gso9g0527 237 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Gso9g0527 237 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Gso9g0527 237 PANTHER - 24 229 - -
Gso9g0527 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 24 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0527 Gso-Chr9 5857298 5858919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0527 89 222 Homeobox Transcription Factor Family AT4G37790 65.734 3.81e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso9g0527 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0527 K09338 - gmx:100790522 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1385 15 15048981 15050797 Gso9g0527 9 5857298 5858919 GST
Gso13g0742 13 21724270 21725911 Gso9g0527 9 5857298 5858919 PCT
Gso17g0473 17 4277393 4279068 Gso9g0527 9 5857298 5858919 PCT
Gso9g0527 9 5857298 5858919 Gso13g0742 13 21724270 21725911 PCT
Gso9g0527 9 5857298 5858919 Gso17g0473 17 4277393 4279068 PCT