Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0524 ATGATGGCATTGGATATGATTGATGTTGTTCCCAGGACGAGGATGGAAGAAGAAAATATAGCAATACAAGAAGCAGCTTCCGCTGGGTTAAAGAGCATGGAGCATCTCATTCGTCTCCTTTCTCCTTCTTCTTCTCTTCACAACAACGTTAATAATCTCAATCTCAACCACCTCGACTGCTCCGAAATCACCGGCTTCACTGTCTCCAAGTTCAAACAAGTCATCAACCTTCTCAACCGCACCGGCCACGCCCGCTTCCGCCGCTCTCCACCCCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCAAACTAATCCTCAACCACAACCTCAGATCCAACAACAAGGGTTCAGTTTAGATTTCGTGAAGCCCACCATTCTAAACTCAAAGCCCATCAACAAAGACGAAACTTTGACTCTTTCAACAACCTCTTCTTCCTTCATGTCCTCCGTCACCAACGACGCCAGCGTCTCCGACGGCAAGATCGGACCTTTCCTCCCTCCCTCCGCCGCCAAACCCCCTCTCTCCTCCGCCCACCGGAAAAAGTGCCGCGACGCCGCCGCAGCACTCTCCGCCAAACCCTCCTGCCACTGCTCCAAGAAAAGGAAATCACGCGTGAAACGAACGATTCGGGTGCCGGCGATAAGCTCAAAGATCGCAGATATCCCACCGGACGAGTATTCGTGGAGAAAATACGGTCAAAAACCGATCAAGGGCTCACCTTACCCTCGAGGGTACTACAAGTGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGAGCGCAGGATGACCCCAAGATGCTAATAGTGACTTACGAGGGTGAGCACCGTCACGTGCTGCCGTTAACTTCCGCCGCCGGCGTTAGTTTCGGCCATTGA 891 0.5354 MMALDMIDVVPRTRMEEENIAIQEAASAGLKSMEHLIRLLSPSSSLHNNVNNLNLNHLDCSEITGFTVSKFKQVINLLNRTGHARFRRSPPQAQAQAQAQAQAQTNPQPQPQIQQQGFSLDFVKPTILNSKPINKDETLTLSTTSSSFMSSVTNDASVSDGKIGPFLPPSAAKPPLSSAHRKKCRDAAAALSAKPSCHCSKKRKSRVKRTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHVLPLTSAAGVSFGH* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0524 296 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g0524 296 Coils Coil 296 296 - -
Gso9g0524 296 MobiDBLite consensus disorder prediction 86 112 - -
Gso9g0524 296 Pfam Plant zinc cluster domain 181 222 IPR018872 -
Gso9g0524 296 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g0524 296 SMART WRKY_cls 224 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g0524 296 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 14 290 - -
Gso9g0524 296 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 290 IPR044810 GO:0003700
Gso9g0524 296 Gene3D WRKY domain 210 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g0524 296 SUPERFAMILY WRKY DNA-binding domain 222 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g0524 296 MobiDBLite consensus disorder prediction 91 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0524 Gso-Chr9 5795549 5797698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0524 7 295 WRKY Transcription Factor Family AT2G24570 50.909 2.10e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso9g0524 WRKY 4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0524 - - gmx:100127391 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1381 15 14954611 14956607 Gso9g0524 9 5795549 5797698 GST
Gso13g0738 13 21668752 21670390 Gso9g0524 9 5795549 5797698 PCT
Gso17g0479 17 4331943 4333609 Gso9g0524 9 5795549 5797698 PCT
Gso9g0524 9 5795549 5797698 Gso13g0738 13 21668752 21670390 PCT
Gso9g0524 9 5795549 5797698 Gso17g0479 17 4331943 4333609 PCT