Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0515 ATGGGCGAAGCGAAGGCGTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAGAGGAACGAGGAGTGGGCTTTGGAGAAGAAGCAGGAACTCGATGCCGCAAAGAAAAAGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCTGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGTATCAATGCCATGGATCCTAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACCGTGAATATGCTGCATAGGGTAGAGCCTTATGTTACCTATGGGTACCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATATTGACTGTTGGACCTCATTTCAAGGAGGCCAACAATTTTCTGTGGCCTTTTAAGCTCAAAGCTCCCCTTGGTGGTTTGGAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGATGCTGGCAACAGGGAGGATTACATAAATGAGCTTATTAGAAGGATGAATTAG 729 0.4321 MGEAKALVPESVVKKEKRNEEWALEKKQELDAAKKKRFETRKLIFNRAKQYSKEYDEQQKELIRLKREAKLKGGFYVEPEAKLLFIIRIRGINAMDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKVNKQRIALNDNSIVEQTLGKHGIICVEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLEKKRNHYVEGGDAGNREDYINELIRRMN* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0515 242 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 4 242 - -
Gso9g0515 242 SUPERFAMILY Ribosomal protein L30p/L7e 83 242 IPR036919 -
Gso9g0515 242 Pfam Ribosomal L30 N-terminal domain 8 79 IPR012988 -
Gso9g0515 242 CDD Ribosomal_L7_archeal_euk 83 242 IPR035808 -
Gso9g0515 242 Pfam Ribosomal protein L30p/L7e 84 134 IPR016082 -
Gso9g0515 242 PANTHER 60S RIBOSOMAL PROTEIN L7 4 242 IPR039699 -
Gso9g0515 242 Coils Coil 48 68 - -
Gso9g0515 242 ProSitePatterns Ribosomal protein L30 signature. 102 134 IPR018038 -
Gso9g0515 242 Gene3D - 83 188 IPR036919 -
Gso9g0515 242 Gene3D - 189 242 IPR036919 -
Gso9g0515 242 TIGRFAM uL30_euk: 60S ribosomal protein uL30 9 242 IPR005998 GO:0000463|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0515 Gso-Chr9 5655917 5658619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0515 2 242 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.647 8.13e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0515 K02937 - gmx:100306213 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1375 15 14813593 14816169 Gso9g0515 9 5655917 5658619 GST