Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0509 ATGGAGAATATTGGAGAAGAGTACAAGCATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAACTTGACAGTTGGGGGTTGGATGAGGCCTTATCTGGGTACTACGATTCGAGTTCCCCGGACGGCGCTGCTTCGTCTGCGGCATCTAAGAACATTGTTTCCGAGAGGAATCGGAGGAAGAAGCTCAATGAAAGGCTTTTTGCGCTTAGATCGGTGGTACCTAACATTAGCAAGATGGACAAGGCTTCGATTATCAAGGATGCTATTGAGTACATCCAGCACTTGCACGAGCAAGAGAAGATTATCCAAGCTGAGATAATGGAACTTGAATCTGGGATGCCAAGAAAGAGTCCAAGCTATGGTTTTGAGCAAGAACAGCTTCCTGTGGTTCTCAGGTCCAAGAAGAAGAGAACAGAGCAGCTATATGATTCTGTTACTTCAAGAAACACCCCAATTGAAGTCCTTGAGCTGAGGGTTACATACATGGGGGAGAAAACTGTTGTGGTGAGTTTGACATGCAGCAAAAGGACAGACACAATGGTGAAACTGTGTGAAGTGTTCGAATCTTTGAAGCTCAAGATCATCACTGCCAACATCACTTCGTTTTCAGGGAGGCTTTTGAAGACTGTCTTCATTGAGGCAAATGAAGAAGAGAAAGATCATTTGCAGATAAAGATCCAGACAGCCATTAAAGCTCTTAATAATGACCCTTTAAGCCCCATGAGCATTTGA 735 0.4435 MENIGEEYKHYWETNMFLQTQELDSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQEKIIQAEIMELESGMPRKSPSYGFEQEQLPVVLRSKKKRTEQLYDSVTSRNTPIEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEEEKDHLQIKIQTAIKALNNDPLSPMSI* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0509 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 237 - -
Gso9g0509 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Gso9g0509 244 SMART finulus 53 102 IPR011598 GO:0046983
Gso9g0509 244 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Gso9g0509 244 PANTHER TRANSCRIPTION FACTOR BHLH35 1 237 - -
Gso9g0509 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Gso9g0509 244 Coils Coil 213 233 - -
Gso9g0509 244 Gene3D - 44 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0509 Gso-Chr9 5504544 5513305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0509 1 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 63.470 1.27e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso9g0509 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0509 - - gmx:100817978 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1371 15 14587833 14596379 Gso9g0509 9 5504544 5513305 GST
Gso13g0730 13 21554306 21561362 Gso9g0509 9 5504544 5513305 PCT
Gso17g0492 17 4470874 4477713 Gso9g0509 9 5504544 5513305 PCT
Gso9g0509 9 5504544 5513305 Gso13g0730 13 21554306 21561362 PCT
Gso9g0509 9 5504544 5513305 Gso17g0492 17 4470874 4477713 PCT