Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0506 ATGCGGGATGTGGATAGTTTAAATAGCGAAGGATCTGGAAAATCTAGTTACTCACAGGAACAGACTATGTCCAAGCTAGTTTCCTCGAAATTCAAAACAAGTAGCACAAAATGCCAAGAGAAGAAACACAAAGTTAAGTTAAAATCTCATAAACACAGAGCTGGTACAAACAAATCAAAGAAGACAGTTACGGATTCTTCCATAAAGGCACCGCTTGAGGATTCTTCGAATAAAAAAGTGATTATTAGAAAATATCGGCATAAAACCGATGGGAAATCTTCGCGGATGCTGTCTTCAACAAAGCTAGAAGGAGGAAAAAATTCTCATAGTTCTGGAATAGAGGGGAATGATGTTGATGGGGAGGAAAAGATTAAAAAACATAAGAGAAGAAAGAAGAAAAGACAAAGGAATAACATGGATGTTGATGATGCTTCACGCCTGCGAAGGAGAACAAGGTACCTCTTAATCAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCAAAAAAGCAGATTTTAAAATGTAAACTTAATATTCGTGATGCCATACGCCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGCCATTGCTCCAGATGGATCTGTTTATCATGAAAATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAGAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTAGAGGCAACAAATGCCCATCTTGGGACTCAATTCTCCCTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTTCTATGCCTGATGGTGACATTGCATTGCTAAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCAGAGAAGAAAGAAGACAGCCACAGCATCGACATAGAAGGAGATGATGGAAATGCATCCAATGATTCAACCAGTTCTTCCAGTCTGTGGTCTTTGAATGGTGAATGTCCTCCAGTAGATGAAGGCGTCAGTCATGAATACTATTCTGTTAATAGCTGCATAGATTCTAATGAATCTGGGGAAATAGCATGTGGCCCTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGATTGGGGTCCTGGCAAAAGAAAGAGAAGAGAAAAGGAGTCTGATGCTGTCAATACTCTTATGACTCTGCATGAAAGTGAGAATAAACATTCCAATAATGAGAAAAATGATACAACAAGAGAGGGCTCTTCAGGCATACAAATAAGAAGATCTTGTTTCAGGATTCCGGTTGATGCCGTTGAGAAACTTCGCCAAGCTTTTGCAGAGAATGAGCTTCCTCCAAGATCTGTGAAGGACAGTCTTTCGAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCTCGTTACTTAGCACTTAAAACCAGAAGGTATCAATCAGAAGGAGAACAGCTTCAGAGTTTCACTTCTAAGATCTCAACGGACTCTATATCTCAAATTGTGGAGAAAGATGAGCTTTTGAAATCAACGGTCTCCAAAATTACTGTGATTCATTCCCAGAAGGATGGTAAAAACATCACAGGCAAAGAGAAAAATAACTTATCTGACAGTCTTTTGAAGAAAAGGCAACAACAAGAAATACCTCCACCTTTGGAAAGAGAAAATGGCAACAAGGATTCTATGGAGGTCAGCAATGATGTTAAGTTGAAGAAAATGCTGAAAAAAAGGAAAAGAGGGGTAAATATTATATTTGAAGGAGATTCTCAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGAGGAAACTAGATAGCATGAAGCAGAAATTAAATGAAGTTCAAAATTGCAGAGCAAAGGGTTCAAATGAACCCTCTATTATATATGTACCCACAGCCCAATTAAGGGAAAAGGTTGAAAAATAA 2145 0.3916 MRDVDSLNSEGSGKSSYSQEQTMSKLVSSKFKTSSTKCQEKKHKVKLKSHKHRAGTNKSKKTVTDSSIKAPLEDSSNKKVIIRKYRHKTDGKSSRMLSSTKLEGGKNSHSSGIEGNDVDGEEKIKKHKRRKKKRQRNNMDVDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLNIRDAIRQLDSLSSVGSIEDSAIAPDGSVYHENIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQDVFKEEASMPDGDIALLNPEEEWPSDDPEDDDYNPEKKEDSHSIDIEGDDGNASNDSTSSSSLWSLNGECPPVDEGVSHEYYSVNSCIDSNESGEIACGPRQRKAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRKRREKESDAVNTLMTLHESENKHSNNEKNDTTREGSSGIQIRRSCFRIPVDAVEKLRQAFAENELPPRSVKDSLSKELGLDPEKVSKWFKNARYLALKTRRYQSEGEQLQSFTSKISTDSISQIVEKDELLKSTVSKITVIHSQKDGKNITGKEKNNLSDSLLKKRQQQEIPPPLERENGNKDSMEVSNDVKLKKMLKKRKRGVNIIFEGDSQAAELEFERLSKVKRKLDSMKQKLNEVQNCRAKGSNEPSIIYVPTAQLREKVEK* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0506 714 MobiDBLite consensus disorder prediction 346 360 - -
Gso9g0506 714 MobiDBLite consensus disorder prediction 596 635 - -
Gso9g0506 714 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 7 694 - -
Gso9g0506 714 Gene3D - 489 556 - -
Gso9g0506 714 SMART PHD_3 234 287 IPR001965 -
Gso9g0506 714 MobiDBLite consensus disorder prediction 618 635 - -
Gso9g0506 714 CDD homeodomain 495 542 IPR001356 GO:0003677
Gso9g0506 714 PANTHER POLYCOMB PROTEIN PCL 7 694 - -
Gso9g0506 714 MobiDBLite consensus disorder prediction 95 114 - -
Gso9g0506 714 MobiDBLite consensus disorder prediction 361 378 - -
Gso9g0506 714 MobiDBLite consensus disorder prediction 326 378 - -
Gso9g0506 714 MobiDBLite consensus disorder prediction 428 459 - -
Gso9g0506 714 ProSiteProfiles Zinc finger PHD-type profile. 232 289 IPR019787 -
Gso9g0506 714 MobiDBLite consensus disorder prediction 41 57 - -
Gso9g0506 714 ProSiteProfiles 'Homeobox' domain profile. 487 547 IPR001356 GO:0003677
Gso9g0506 714 ProSitePatterns Zinc finger PHD-type signature. 235 286 IPR019786 -
Gso9g0506 714 MobiDBLite consensus disorder prediction 8 34 - -
Gso9g0506 714 SMART HOX_1 489 551 IPR001356 GO:0003677
Gso9g0506 714 Pfam PHD-finger 234 289 IPR019787 -
Gso9g0506 714 MobiDBLite consensus disorder prediction 1 144 - -
Gso9g0506 714 MobiDBLite consensus disorder prediction 331 345 - -
Gso9g0506 714 CDD PHD_PRHA_like 234 286 IPR045876 -
Gso9g0506 714 MobiDBLite consensus disorder prediction 428 486 - -
Gso9g0506 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 283 IPR013083 -
Gso9g0506 714 SUPERFAMILY FYVE/PHD zinc finger 226 291 IPR011011 -
Gso9g0506 714 SUPERFAMILY Homeodomain-like 490 553 IPR009057 -
Gso9g0506 714 Pfam Homeodomain 499 542 IPR001356 GO:0003677
Gso9g0506 714 Coils Coil 670 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0506 Gso-Chr9 5446047 5453096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0506 137 552 Homeobox Transcription Factor Family AT4G29940 59.346 2.31e-161 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gso9g0506 Homeodomain 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0506 - - gmx:100816912 1347.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1366 15 14492018 14505883 Gso9g0506 9 5446047 5453096 GST
Gso13g0724 13 21512507 21518191 Gso9g0506 9 5446047 5453096 PCT
Gso17g0497 17 4513312 4519159 Gso9g0506 9 5446047 5453096 PCT
Gso9g0506 9 5446047 5453096 Gso13g0724 13 21512507 21518191 PCT
Gso9g0506 9 5446047 5453096 Gso17g0497 17 4513312 4519159 PCT