LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso9g0477	ATGTCCAACAAAGCTGCTCCGGAAATAAAGTATGATGTTTTTGTTAGCTTCAGGGGCCAGGACATCCGCGACGGGTTTCTTAGCCATTTGATTGACACTTTTGAAAGGAAGAAAATAAACTTCTTCGTAGATTATAATCTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTCGAGGATCATTGATTTTGTTGGTCATATTCTCTCCAGACTATGCTTCTTCGTGTTGGTGTTTAGAAGAACTTGTGAAAATACTTGAATGCAGAGAGGAATACGGACGTATTGTAATCCCAGTTTTCTACCATATACAACCCACACATGTTCGACATCAATTGGGGAGTTATGCAGAAGCATTTGCTGTGCATGGAAGAAAACAAATGATGAAGGTGCAACACTGGAGACATGCTTTGAATAAATCTGCCGATTTAGCCGGAATTGACTCATCAAAATTTCCAAACGATGCTGCGGTGCTTAATGAAATTGTCGATCTGGTACTGAAGAGGTTAGTTAAACCCCATGTTATCTCAAAAGGGCTTGTTGGAATTGAAGAGAAAATTACAACCGTAGAATCATGGATAAGAAAAGAGCCAAAGGACAACCTTCTTATTGGAATTTGGGGTATGGGAGGTATTGGCAAGACAACCCTTGCAGAAGAAATATTTAATAAATTACAATATGAATATGAAGGTTGTTATTTTTTAGCCAATGAAAGAGAAGAATCAAAGAATCATGGAATAATTTCTTTGAAGAAAAGAATTTTTTCTGGGCTATTACGATTACGATATGATGATGTGGAAATTTACACAGAAAATTCCTTACCTGATAATATTCTTAGAAGAATTGGCCATATGAAGGTTCTTATTGTTCTTGATGATGTGAGTGATTCAGACCACTTGGGAAAATTGTTGGGAACTCTTGACAATTTTGGATCTGGTAGCAGAATACTTGTAACAACTAGAGATGAACAAGTTCTGAAGGCTAAGAAAGTAAAAAAGACATACCACCTTACAGAACTCAGTTTTGATAAAACACTGGAACTTTTCAATTTGAATGCCTTCAACCAAAGTGATCGTCAAAAGGAGTACTATGAGTTATCACTTAGGGTGGTCAATTATGCCAAAGGCATTCCATTAGTTGTTAAAGTTTTGGCTGGTCTTCTTCATGGAAAAAACAAGGAAGAATGGGAAAGTTTGCTAGACAAGCTTAAAAAAATCCCTCCTACAAAAGTTTATGAAGTCATGAAACTGAGTTACGATGGTCTAGATCGTAAAGAGCAACAAATTTTTCTAGATCTGGCATGTTTCTTTCTTAGATCGAATATAATGGTGAACACTTGCGAGCTAAAATCTTTATTGAAAGATACTGAAAGTGACAATTCAGTGTTTTATGCATTAGAAAGATTGAAAGATAAAGCTCTTATAACTATTTCTGAGGATAATTATGTATCGATGCATGATAGTTTGCAAGAAATGGCATGGGAGATTATTCGACGAGAGTCTAGCATAGCTGGAAGCCACAGTCGGTTGTGGGATTCTGATGACATTGCTGAAGCATTGAAAAATGGCAAGAATACTGAAGACATTAGAAGCCTACAGATTGACATGCGAAATCTTAAGAAGCAGAAGTTAAGTCATGACATATTTACGAACATGAGCAAATTACAATTTCTGAAAATCTCTGGAAAATATAATGATGATTTACTTAATATTCTTGCTGAAGGGCTTCAATTTTTGGAAACTGAGCTAAGATTTCTCTATTGGGATTATTACCCTCTAAAATCGTTGCCAGAAAATTTTATTGCCAGAAGACTTGTCATATTGGAATTTCCATTTGGCAGAATGAAAAAACTTTGGGATGGAGTCCAGAATCTGGTGAATCTAAAAAAAGTTGACCTCACTTCCTCCAATAAGTTAGAGGAGCTCCCAGATTTATCAGGAGCCACAAATCTTGAAGAACTGAAACTTGGGGGTTGTTCAATGTTAACAAGTGTGCATCCATCTATTTTCTCGCTGCCCAAACTTGAGAAATTGTTCCTTATTAACTGCAAGTCTCTTACCATAGTCACAAGTGATTCCAAATTATGCAGCCTCAGTCATCTCTACCTTCTTTTTTGCGAGAATCTTAGGGAATTCTCACTAATATCAGACAATATGAAAGAACTAAGATTAGGATGGACAAATGTGAGAGCATTGCCCTCATCATTTGGATATCAAAGCAAACTTAAATCACTAGATCTAAGAAGAAGTAAGATTGAGAAGTTACCTTCATCCATCAACAATCTTACGCAACTGCTACATCTAGACATACGTTATTGCCGGGAGCTTCAAACAATACCAGAGCTTCCCATGTTCCTTGAAATTCTAGATGCTGAATGTTGCACTTCACTTCAGACTCTGCCAGAGCTTCCCCGGTTCCTTAAAACACTAAATATCAGAGAATGCAAATCGCTTCTGACTTTACCGGTGCTTCCCTTGTTCCTTAAAACTCTTGACGCCAGTGAATGCATATCATTGAAGACTGTGTTATTGTCTCCTTCAACGGCTGTTGAACAGTTAAAGGAAAACAGTAAACGGATTCTGTTCTGGAATTGCTTGAACTTGAATATATATTCTTTAGCGGCTATTGGGCAGAATGCACAAACCAATGTGATGAAATTTGCAGGCCAACACCTTTCTACCCCAAATCACCATCATGTTGAAAATTACAGTGATTATAAGGATAATTATGGTTCTTACCAAGCTGTTTACGCATACCCTGCAAGCAATGTTCCACCATGGTTGGAGTATAAGACAAGAAATGATTATATAATTATTGATCTATCTTCTGCCCCACCTTCGCCTCTCCTTGGCTTCATTTTTGGCTTCGTCTTTGGTGAGAGCACAGACATGAATGAAAGGCGTGAAGTTAACATCACTATAAGTGATGTTAAGGGTAAAGGTAAAAGGGAGACCAACAGAGTCAGAATGTACATAGATTATGGCATTGGGAAAATTATATCAGATCAGGTGTGTGTGATATACGACCAAAGATGTTCTGACTTCCTAAAGAGAAGAGCCGAAAATCAAACAAGCTTTATAATCCAGGTTACAATTCAGGCACAATGGGCAGTCGATCCAGGTTTAAAAGAATTTGGGGTCAGCCCAATAAGCACCTTGACATATAAAAGTTTCATTGACATTGAAGAAATGGAATTGCATGACAGTGACTGA	3219	0.3737	MSNKAAPEIKYDVFVSFRGQDIRDGFLSHLIDTFERKKINFFVDYNLEKGDEIWPSLVGAIRGSLILLVIFSPDYASSCWCLEELVKILECREEYGRIVIPVFYHIQPTHVRHQLGSYAEAFAVHGRKQMMKVQHWRHALNKSADLAGIDSSKFPNDAAVLNEIVDLVLKRLVKPHVISKGLVGIEEKITTVESWIRKEPKDNLLIGIWGMGGIGKTTLAEEIFNKLQYEYEGCYFLANEREESKNHGIISLKKRIFSGLLRLRYDDVEIYTENSLPDNILRRIGHMKVLIVLDDVSDSDHLGKLLGTLDNFGSGSRILVTTRDEQVLKAKKVKKTYHLTELSFDKTLELFNLNAFNQSDRQKEYYELSLRVVNYAKGIPLVVKVLAGLLHGKNKEEWESLLDKLKKIPPTKVYEVMKLSYDGLDRKEQQIFLDLACFFLRSNIMVNTCELKSLLKDTESDNSVFYALERLKDKALITISEDNYVSMHDSLQEMAWEIIRRESSIAGSHSRLWDSDDIAEALKNGKNTEDIRSLQIDMRNLKKQKLSHDIFTNMSKLQFLKISGKYNDDLLNILAEGLQFLETELRFLYWDYYPLKSLPENFIARRLVILEFPFGRMKKLWDGVQNLVNLKKVDLTSSNKLEELPDLSGATNLEELKLGGCSMLTSVHPSIFSLPKLEKLFLINCKSLTIVTSDSKLCSLSHLYLLFCENLREFSLISDNMKELRLGWTNVRALPSSFGYQSKLKSLDLRRSKIEKLPSSINNLTQLLHLDIRYCRELQTIPELPMFLEILDAECCTSLQTLPELPRFLKTLNIRECKSLLTLPVLPLFLKTLDASECISLKTVLLSPSTAVEQLKENSKRILFWNCLNLNIYSLAAIGQNAQTNVMKFAGQHLSTPNHHHVENYSDYKDNYGSYQAVYAYPASNVPPWLEYKTRNDYIIIDLSSAPPSPLLGFIFGFVFGESTDMNERREVNITISDVKGKGKRETNRVRMYIDYGIGKIISDQVCVIYDQRCSDFLKRRAENQTSFIIQVTIQAQWAVDPGLKEFGVSPISTLTYKSFIDIEEMELHDSD*	1073

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso9g0477	1072	Gene3D	-	5	173	IPR035897	-
	Gso9g0477	1072	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	7	1067	IPR044974	GO:0006952
	Gso9g0477	1072	Gene3D	-	174	337	IPR027417	-
	Gso9g0477	1072	Pfam	TIR domain	10	171	IPR000157	GO:0007165
	Gso9g0477	1072	ProSiteProfiles	TIR domain profile.	9	172	IPR000157	GO:0007165
	Gso9g0477	1072	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	148	IPR035897	-
	Gso9g0477	1072	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	172	435	IPR027417	-
	Gso9g0477	1072	PRINTS	Disease resistance protein signature	205	220	-	-
	Gso9g0477	1072	PRINTS	Disease resistance protein signature	283	297	-	-
	Gso9g0477	1072	PRINTS	Disease resistance protein signature	376	390	-	-
	Gso9g0477	1072	PRINTS	Disease resistance protein signature	625	641	-	-
	Gso9g0477	1072	SUPERFAMILY	"Winged helix" DNA-binding domain	411	523	IPR036390	-
	Gso9g0477	1072	SMART	till_3	10	146	IPR000157	GO:0007165
	Gso9g0477	1072	Gene3D	-	341	425	IPR042197	-
	Gso9g0477	1072	SUPERFAMILY	L domain-like	536	846	-	-
	Gso9g0477	1072	Gene3D	Ribonuclease Inhibitor	508	692	IPR032675	-
	Gso9g0477	1072	Gene3D	Ribonuclease Inhibitor	693	859	IPR032675	-
	Gso9g0477	1072	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	7	1067	-	-
	Gso9g0477	1072	Pfam	NB-ARC domain	188	418	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso9g0477	Gso-Chr9	5017152	5025121	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso9g0477	11	783	WRKY Transcription Factor Family	AT4G12020	31.858	1.23e-93	327

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso9g0477	-		-	gmx:100819060	2118.58