Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0474 ATGGAGTGGGACAGCAATTCCGATCTCAGCGACGACGAGGCCGTTTCGTTTATGTTAAACGACGACGATGATGACGCCGTTGGACCCCTACCCTTCCCCGTTCTCCAAACGGCGCCGTGCGGCTTCGTCGTCACCGACGCCGTCGAGCCCGACCACCCCATCATATACGTCAACGCCGTCTTCGAGATGGTCACCGGATACCGCGCCGAAGAAGTGCTCGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACTGTTGTTTCAGAGATCAGAAGATGCCTTGACGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTGACACCTATATATGGAGAAGATGAGATAACTCATGTCATCGGAATCCAGTTCTTTACAGAGGCAAACATTGATCTTGGTCCCCTTCCGGGTTCTACAATTAAAGAATCTACTAAATCATCAGATCGGTTTCATTCTGTGCTTTCTTCGTTGAATCCTGTTCCAGTGGGGGATCGCAATGTTACTCGTGGAATTTGTGGGATATTGCAATTAAGTGACGAGGTATTGTCTCTCAAGATACTTGCTCGTTTAACTCCAAGAGATATTGCATCAGTTGGTTCTGTTTGTAGGCATTTGTATGAGCTAACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCTTGGGGCAGTGAGACTACACGTGTTTTAGAGACCGTGCCTGGTGCAAGGAGGCTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACCCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCTTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTCGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTCAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGGTGTGGAACGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCGAGATCATGGCATAGCTCCTGTACTCTTGATGGTACCAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGGGTACTCTTGAGTGATACTTTCCTCCTTGATCTGTCAATGGAGAAACCTGTCTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCGCGTCTGGGTCACACACTATCCGTTTATGGTGGCAGAAAAATACTGATGTTTGGGGGTCTGGCCAAGTGTGGGGCCCTGCGTTTTCGCTCCAGTGATGTGTTCACGATGGATTTAAGTGAGGAGGAGCCATGCTGGAGATGTGTAACAGGGAGTGGATTGCCAGGATTGCCAGGTACTGGAAATCCTGGAGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTCAGCCTTCCCGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCGGGCCTTCATTCTGCCTCCCAGCTTTACATACTAGATCCTACTGATGAGAAGCCTACATGGAGAATCCTTAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTAATGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAACTCCATGAACTTTCCTTGGCAAGTTCTGTCAGTTAG 1845 0.4883 MEWDSNSDLSDDEAVSFMLNDDDDDAVGPLPFPVLQTAPCGFVVTDAVEPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGEDEITHVIGIQFFTEANIDLGPLPGSTIKESTKSSDRFHSVLSSLNPVPVGDRNVTRGICGILQLSDEVLSLKILARLTPRDIASVGSVCRHLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKCGALRFRSSDVFTMDLSEEEPCWRCVTGSGLPGLPGTGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVMGGQTGEEWMLSELHELSLASSVS* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0474 614 Pfam Galactose oxidase, central domain 357 406 - -
Gso9g0474 614 ProSiteProfiles PAS repeat profile. 34 109 IPR000014 -
Gso9g0474 614 SUPERFAMILY Kelch motif 281 492 IPR015915 GO:0005515
Gso9g0474 614 SUPERFAMILY F-box domain 191 260 IPR036047 GO:0005515
Gso9g0474 614 Pfam Galactose oxidase, central domain 295 345 - -
Gso9g0474 614 CDD PAS 38 140 IPR000014 -
Gso9g0474 614 Pfam Kelch motif 452 503 IPR011498 GO:0005515
Gso9g0474 614 Pfam Kelch motif 522 569 IPR011498 GO:0005515
Gso9g0474 614 Gene3D - 196 243 - -
Gso9g0474 614 Gene3D PAS domain 32 159 - -
Gso9g0474 614 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 148 IPR035965 -
Gso9g0474 614 PANTHER ADAGIO PROTEIN 1-LIKE 1 613 - -
Gso9g0474 614 TIGRFAM sensory_box: PAS domain S-box protein 50 147 IPR000014 -
Gso9g0474 614 SUPERFAMILY Kelch motif 518 602 IPR015915 GO:0005515
Gso9g0474 614 Pfam F-box-like 207 245 IPR001810 GO:0005515
Gso9g0474 614 Gene3D - 273 426 IPR015915 GO:0005515
Gso9g0474 614 Gene3D - 448 612 IPR015915 GO:0005515
Gso9g0474 614 Pfam PAS domain 39 148 IPR000014 -
Gso9g0474 614 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0474 Gso-Chr9 4941521 4949348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0474 34 242 AGC Kinase Gene Family AT5G58140 26.471 8.15e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0474 K12115 - gmx:100805523 1207.59