Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0469 ATGAAGTATATTAGGAGCAACAGCTTGAAGAGGCTCTTCTCGTTTGGAAGACGCGGTTTTGGGGAGGAAAACGATGTAGGGTTGGTGGTTTCTCCTTGTGAAGAGCACCCTCCAAGACCCTCTTGGAAATGCTTCTCTTATGAAGAGTTATTTGATGCCACCAATGGCTTTAGCTCAGAGAATGTGATTGGGAGAGGAGGGTATGCAGAGGTTTATAAGGGAACATTGAATGGTGGTGATGAAGTTGCGGTGAAGAGGCTCACAAGAACTTCAACGGATGAAAGGAAGGAGAAGGAGTTTCTGTTAGAGATTGGAACCATTGGTCACGTGCGCCATTCCAACGTGTTGCCTCTTCTTGGGTGTTGCATTGACAATGGACTTTACCTGGTTTTTGAGCTATCCACTGTTGGTTCTGTTGCTTCTCTTATTCATGATGAGAACTTGCCTCCTTTGGATTGGAAAACAAGGTATAAGATAGCTCTAGGCACTGCACGTGGCCTTCACTACTTGCACAAAGGCTGCAAGAGGAGGATCATTCATAGGGACATCAAGGCCTCAAACATTTTGTTAACTGCAGATTTTGAACCGAAGATATCTGATTTTGGACTTGCAAGGTGGCTTCCCTCTCAGTGGACTCACCATTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCTGAGTACTACTTGCATGGAGTAGTGGATGAGAAAACAGATGTATTTGCCTTTGGTGTGTTCTTGCTTGAAGTCATCTCTGGGAGGAAACCAGTGGATGGGTCTCACCAAAGCTTGCACAGCTGGGCTAAACCAATACTAAGCAAAGGGGAGATAGAAAATTTGGTAGATCCAAGGCTTGGAGGGGCTTATGACGTGACACAGTTTAATAGAGTAGCCTTTGCTGCCTCCCTTTGCATTAGGGCATCTGCAACTTGCAGACCTATCATGAGTGAGGTACTGGAGGTAATGGAGGAGTGGGAGATGGATAAAGGGAAGTGGGAAATGCCAGAGGAAGAAGAGCAAGAGGAGGAATTATGGGGTTTTGAGGATCTGGAATATGAATATGACAGTTCCTTTTCAATGTCACTACCATACTCTGTTGGAAGTACTTAG 1116 0.4534 MKYIRSNSLKRLFSFGRRGFGEENDVGLVVSPCEEHPPRPSWKCFSYEELFDATNGFSSENVIGRGGYAEVYKGTLNGGDEVAVKRLTRTSTDERKEKEFLLEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSTVGSVASLIHDENLPPLDWKTRYKIALGTARGLHYLHKGCKRRIIHRDIKASNILLTADFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILSKGEIENLVDPRLGGAYDVTQFNRVAFAASLCIRASATCRPIMSEVLEVMEEWEMDKGKWEMPEEEEQEEELWGFEDLEYEYDSSFSMSLPYSVGST* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0469 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Gso9g0469 371 PANTHER OS08G0249100 PROTEIN 29 352 - -
Gso9g0469 371 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Gso9g0469 371 SUPERFAMILY Protein kinase-like (PK-like) 35 326 IPR011009 -
Gso9g0469 371 ProSiteProfiles Protein kinase domain profile. 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0469 371 CDD STKc_IRAK 63 326 - -
Gso9g0469 371 SMART serkin_6 57 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0469 371 Pfam Protein tyrosine and serine/threonine kinase 60 264 IPR001245 GO:0004672|GO:0006468
Gso9g0469 371 PANTHER OS04G0654600 PROTEIN 29 352 - -
Gso9g0469 371 Gene3D Transferase(Phosphotransferase) domain 1 135 350 - -
Gso9g0469 371 Gene3D Phosphorylase Kinase; domain 1 32 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0469 Gso-Chr9 4864405 4868962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0469 41 360 Trihelix Transcription Factor Family AT5G38560 39.589 9.69e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso9g0469 PK_Tyr_Ser-Thr 6.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0469 - - gmx:100804983 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1325 15 13813679 13818069 Gso9g0469 9 4864405 4868962 GST
Gso13g0700 13 21212174 21217218 Gso9g0469 9 4864405 4868962 PCT
Gso17g0523 17 4780428 4785850 Gso9g0469 9 4864405 4868962 PCT
Gso9g0469 9 4864405 4868962 Gso13g0700 13 21212174 21217218 PCT
Gso9g0469 9 4864405 4868962 Gso17g0523 17 4780428 4785850 PCT