Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0448 ATGGCGACGACGTCGGTGGTGCCGGCGAATCGGCGGCGTGCGGCGGCGAACCCCGCCGAGGATATGGACTTCGAGACGACGGAGGGCGTGAAGGCCATCGCGAGCTTCGAGGAGATGGGGATCAAGGACGATCTGCTCCGCGGAATCTACCAGTACGGCTTCGAGAAGCCCTCAGCCATTCAGCAGCGGGCCGTGACTCCGATCATTCAGGGCCGTGACGTCATCGCCCAGGCCCAATCCGGAACGGGCAAAACCTCCATGATTGCTCTCACCGTTTGCCAGGTCGTCGATACCTCTGTCAGAGAGGTTCAGGCTTTAATATTGTCACCAACGAGGGAACTGGCCTCGCAAACTGAGAAGGTTATATTGGCTATTGGGGATTTCATCAATATACAAGCTCATGCATGCGTTGGAGGTAAAAGTGTGGGAGAAGACATAAGGAAACTTGAGTATGGAGTTCATGTGGTGTCTGGAACTCCTGGCCGAGTTTGTGACATGATCAAAAGGAGAACATTACGCACAAGGGCTATCAAGATGCTAGTTCTTGATGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCTGACCTTCAGGTTTGTTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAGATGACAAACAAGTTCATGACAGATCCTGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAGCAATTTTTTGTTGCGGTCGAAAGGGAGGAATGGAAGTTTGATACCCTGTGTGATCTTTATGATACCCTCACTATCACTCAAGCTGTTATATTCTGTAATACTAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAACAATTTCACTGTCTCATCAATGCACGGTGACATGCCTCAGAAAGAAAGAGATGCTATTATGGGAGAATTTCGTGCTGGAACAACCCGTGTGCTAATAACAACTGACGTTTGGGCCCGTGGTCTTGATGTACAGCAGGTTTCTCTAGTTATCAATTATGACCTTCCCAATAATCGTGAGCTTTACATTCATCGAATTGGTCGCTCTGGACGTTTTGGACGAAAGGGTGTTGCAATAAATTTTGTGAAGAGTGATGACATCAAGATCTTGAGAGACATTGAACAATACTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTTATATAA 1224 0.4616 MATTSVVPANRRRAAANPAEDMDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0448 407 CDD SF2_C_DEAD 247 377 - -
Gso9g0448 407 Gene3D - 19 238 IPR027417 -
Gso9g0448 407 Gene3D - 239 407 IPR027417 -
Gso9g0448 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 390 IPR027417 -
Gso9g0448 407 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 407 IPR001650 -
Gso9g0448 407 SMART ultradead3 53 250 IPR014001 -
Gso9g0448 407 SMART helicmild6 287 368 IPR001650 -
Gso9g0448 407 Pfam DEAD/DEAH box helicase 59 221 IPR011545 GO:0003676|GO:0005524
Gso9g0448 407 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 65 235 IPR014001 -
Gso9g0448 407 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 34 62 IPR014014 GO:0003724
Gso9g0448 407 CDD DEADc_EIF4AIII_DDX48 36 236 - -
Gso9g0448 407 PANTHER BNAC03G41130D PROTEIN 21 400 - -
Gso9g0448 407 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 400 - -
Gso9g0448 407 Pfam Helicase conserved C-terminal domain 260 368 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0448 Gso-Chr9 4528568 4532570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0448 24 407 Eukaryotic Initiation Factors Gene Family AT3G19760 89.323 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0448 K13025 - gmx:100800020 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1306 15 13455856 13460106 Gso9g0448 9 4528568 4532570 GST