Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0446 ATGGTCTTCTCAACTGTCTTTCTCCATGAAGATGACACCTTTTTTTCTAGAAAAAGGCCAAGAGTGTCAGATCTTGGACATCAAGATATAGATTTACATGCAGATGCAGGAAGTTCCAGTGATATTTCCTTGTTCTCGCATCAAGATATAGAAAGGTGCAGGGGTACTGGTGATGTTCCCTCTTCCAGCAATACTGATGATAAAGTTGATCCAGATTCTGGAGTGGAGATGAGCTGCCCGTCAAATGTTAAGAGTGGCTATGTCCCTGTGTGTTCTACCACAGGGCATATTTCACACATGGACCAGAGTTTCTGTGGCTATGTGCAACAACCTGCTTTTGTGAGTGGATGGATGTATGTTAATGAAAATGGGCAAATGTGTGGTCCCTATATTAAGGAACAGTTATATGAGGGCCTAACTACTGGTTTCTTGCCATCTGAGCTTCCTGTGTATCCAGTGATTAATGGCACACTAATGAGCCCTGTACCACTGAATTACTTCAAGCAGTTCCCTGATCATGTTTCCACTGGGTTTGCATATCTGAGTATGGGTTTCTCAGGCACAAGGGTGCCAACAATGGCAGCATATGAGCAAGATAGGTCTTTTGAGCATGCTGCTCCTCTGGCTGTTAATCCTGATTCACAGCCAGTTTCACAGTCACACGTCAATTACTGCATTAAGGAATCCAATCACGTAAATTCAAACTCAGAGGCATTCAAAAGTTTAATATCTTGTCAGATGTTAGGTGTAGAATGCTGTTGGCTTTATGAGGATGAGAAGGGTATGAAACATGGGCCTCATTCTATTAACGAATTGATTTCCTGGAACCGTCATGGATATCTGAAAGATTCAACAGTGATCTCTCATTCTGACAATAAGTACGACACCTTTGTGCTATTGTCTGCTGTAAATGCATTAAAAGGAGATATCTCTGGAACCATTTGTAGATCAGGTTCCCCAAGTAACGAGGTTGGTGATATGGTAAACTTAATTGGTGAAATATCTGAGGACATTTCTTCCCAATTGCACATGGGTATCATGAAAGCTGCTCGCAGAGTTGTGCTAGATGGAATTATTGGTGATATCATTGCAGAATTTGTTACGGAAAAGAAACGTACGAGGCATAAGCTTGAATCAGCTGATTGTACTCCTGGAAACAATATGTCTAAGTTTTCTGCCGAGATTAGTAGAGGTTCTGCTATTTCCAGTGATCCTGCATCTTCCCACACTTTGGACGATCAGACTTGTCATGAAAGTTCCAGACTGCCCCCTGCCATCATTAAATCAGTTGGAAGCATTGAAAATTTTTGGTGGTCATATGCTGTTGTTCGCAAGGTACTTCTTGATTATTCCATGCAAGTCATGTGGAATGCAGTGTTTTTTGACACACTAGCAGAATACTTATCTTCCTGGAGGAAAAAGAAGCTTTGGTCTCATCGTAAGCCTCAACCTTCTGCTAATGAATGTGAAGATCATACTGAAAAGATTGAATCAGAAGCTTTGGTTATCAATCCAGATACTTCTGAAAGCAATGTTGATGGCTATAATCAGTTTGGAGTACTGGCAACAGAAAAAAATTGTCCCCAGTTATTTTCATCTTCCAGTAGCCTCAAAGGTGGAAACTTACTAGAAGGTCAAAAAGTTTCATGCCTTTATGATAACTCTAGAGATTTGACTTGTATTCTTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGGTGTCTTTAGCTGATTACATTCAAAGTTTTATTGAAAAGGAAGTGAACAAATTAATTCCTTTCCCAGAAGAAAACAAATTTAATGAGGTTGCTGTTGGAGACACTCGTTTTTCAGAGAAACTTGCAGATAAAACGTCTGTGAAGGAAATTCTAAATGACAAGTCTGTGGATCCTGCAAAGGCTGGAAATTCTTTTGGCGAGTCTGCGTCTGGAAACCATATGTCTGACGTATTTTCGAAAGCATTTAAGGAGTTGTGTGGATATGTAGATGATGTGGTTGAAGAGGAGATTGATGACCTACCACCTGGGCTTGAGAAATCTCAAACAGTTGCCCTTCACTACAATTCCAAATTTCGACCTTCAAGGTCGGCTGAATGTAATCCTAAGATAACAGAATATGTTGCTACAGCACTGTGCCGACAGAAACTGCATGATGAAGTTCTGGAAAAGTGGAGGTCGTTGTTTCTTGATTCTGTGCCCAAGCAAGTTTTTATATCATCAAGCACCATAAAGAAACATTTCAAGTCTGATGGTCATAAGAAAAGAAAAACGGTCAATGCAAGCAAGGAACATTTGAATAGTGCTACTTCTGGACTGGGAAGAGTGAAGGAAGGAGCAAAGAGTTCTTCTGAAGTTCCTCCGGTGATTGGAAAGTATACCTATTGCCGCAAGAAACTGTCAAGGAAGGAGTTAATTTCCTCAAAATCTGTAGCAGAAAATGATTCTAGGCCAGGTAAGCAGCCTGTGGCCAAGTTGAGGAAACATTTTTCTGGAGATGTTGGTGAGGCTGCAGAGGTTAAAATAGCTTCTGTTATACATGGAAAGACAAAGATGATTAAAGGGAAGAAGGATACAACTTCTAAGGGCAAATCTTCTGTCAGTGTCAATAGTAGCTCACACAATGATCAATTATCTTTAAAGAATAAAGCTGGTCAAAAAGTGTTGAAGTTTTCGGGTGAAGTTCAAAATGATGTTAAAGATTTTGTAAAATCCAATGTAAAGAAGCTTTCAGCATCAACTGATAATAGCGTTGTCATGAAGAAGATTGTCAAAAGTGATGGCACTGTTAAAGAGAAGGTCACAAGTCATTGCTCCAGACAGATACAAAATGCAACAATGAAAGTATCAAAATCAAAAAGGAAACATCAAATGGATGGTACAGCATCTTCACATCCTACAAAGGTTTTGAAAATTTCAAATGGTGGTGCTTATCTGGGAGCCAGTAAACAAGTTACTGTGGCAAGTAGGAAGTCTGCTAAATCCAAGCCACTGAATTTGTGTCCTAGATCTGATGGATGTGCCAGGACTTCTATTGATGGCTGGGAATGGCATAAATGGTCCCGAAGTGCCAGTCCTGCATATAAAGCACGTGTTAGGGGTCTTCCATGTGTACAGAACAAGTGCATAGATTCTGAAAATAATTTATCTCAGTTGTCAAATGGCAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCTGCAGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAGAAGCATTTGCGTTTTCAAAGGAGCAAGATCCATGATTGGGGTCTTCTTGCCTTGGAGCCAATTGAGGCAGAGGATTTTGTGATTGAATATATTGGAGAACTGATTCGTCCTCGGATATCTGATATACGTGAACGTCAGTATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCTACCAAGAGAGGTGGGATTGCAAGATTTGTTAACCACTCTTGTGAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCGAAACGGCATATAGCTGCTGGTGAAGAAATTACATACAATTATAAGTTCCCCTTGGAGGAGAAAAAGATTCCCTGTAACTGTGGCTCCAGAAAGTGTCGTGGATCATTGAATTAG 3690 0.4033 MVFSTVFLHEDDTFFSRKRPRVSDLGHQDIDLHADAGSSSDISLFSHQDIERCRGTGDVPSSSNTDDKVDPDSGVEMSCPSNVKSGYVPVCSTTGHISHMDQSFCGYVQQPAFVSGWMYVNENGQMCGPYIKEQLYEGLTTGFLPSELPVYPVINGTLMSPVPLNYFKQFPDHVSTGFAYLSMGFSGTRVPTMAAYEQDRSFEHAAPLAVNPDSQPVSQSHVNYCIKESNHVNSNSEAFKSLISCQMLGVECCWLYEDEKGMKHGPHSINELISWNRHGYLKDSTVISHSDNKYDTFVLLSAVNALKGDISGTICRSGSPSNEVGDMVNLIGEISEDISSQLHMGIMKAARRVVLDGIIGDIIAEFVTEKKRTRHKLESADCTPGNNMSKFSAEISRGSAISSDPASSHTLDDQTCHESSRLPPAIIKSVGSIENFWWSYAVVRKVLLDYSMQVMWNAVFFDTLAEYLSSWRKKKLWSHRKPQPSANECEDHTEKIESEALVINPDTSESNVDGYNQFGVLATEKNCPQLFSSSSSLKGGNLLEGQKVSCLYDNSRDLTCILESVENELHFSSKVSLADYIQSFIEKEVNKLIPFPEENKFNEVAVGDTRFSEKLADKTSVKEILNDKSVDPAKAGNSFGESASGNHMSDVFSKAFKELCGYVDDVVEEEIDDLPPGLEKSQTVALHYNSKFRPSRSAECNPKITEYVATALCRQKLHDEVLEKWRSLFLDSVPKQVFISSSTIKKHFKSDGHKKRKTVNASKEHLNSATSGLGRVKEGAKSSSEVPPVIGKYTYCRKKLSRKELISSKSVAENDSRPGKQPVAKLRKHFSGDVGEAAEVKIASVIHGKTKMIKGKKDTTSKGKSSVSVNSSSHNDQLSLKNKAGQKVLKFSGEVQNDVKDFVKSNVKKLSASTDNSVVMKKIVKSDGTVKEKVTSHCSRQIQNATMKVSKSKRKHQMDGTASSHPTKVLKISNGGAYLGASKQVTVASRKSAKSKPLNLCPRSDGCARTSIDGWEWHKWSRSASPAYKARVRGLPCVQNKCIDSENNLSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKHLRFQRSKIHDWGLLALEPIEAEDFVIEYIGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFVNHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCNCGSRKCRGSLN* 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0446 1229 Gene3D SET domain 899 1229 IPR046341 -
Gso9g0446 1229 SUPERFAMILY SET domain 1085 1226 IPR046341 -
Gso9g0446 1229 MobiDBLite consensus disorder prediction 54 76 - -
Gso9g0446 1229 Gene3D - 107 178 IPR035445 -
Gso9g0446 1229 Gene3D - 244 322 IPR035445 -
Gso9g0446 1229 CDD SET_SETD1 1078 1225 - -
Gso9g0446 1229 ProSiteProfiles GYF domain profile. 251 307 IPR003169 GO:0005515
Gso9g0446 1229 ProSiteProfiles SET domain profile. 1090 1207 IPR001214 GO:0005515
Gso9g0446 1229 MobiDBLite consensus disorder prediction 852 881 - -
Gso9g0446 1229 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 13 1229 IPR044570 GO:0042800|GO:0051568
Gso9g0446 1229 ProSiteProfiles Post-SET domain profile. 1213 1229 IPR003616 -
Gso9g0446 1229 SUPERFAMILY GYF domain 249 305 IPR035445 -
Gso9g0446 1229 SMART PostSET_3 1213 1229 IPR003616 -
Gso9g0446 1229 SMART gyf_5 252 306 IPR003169 GO:0005515
Gso9g0446 1229 Pfam SET domain 1102 1206 IPR001214 GO:0005515
Gso9g0446 1229 MobiDBLite consensus disorder prediction 948 967 - -
Gso9g0446 1229 MobiDBLite consensus disorder prediction 862 881 - -
Gso9g0446 1229 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 13 1229 - -
Gso9g0446 1229 SMART set_7 1090 1213 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0446 Gso-Chr9 4466852 4484564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0446 1081 1229 C2H2 Transcription Factor Family AT2G23740 37.427 1.19e-18 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso9g0446 SET 2.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0446 - - gmx:100805708 2430.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1302 15 13368671 13393627 Gso9g0446 9 4466852 4484564 GST