Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0427 ATGGCTTCTTCTATTCCTCTTTATCAACCAACCAACACCTTATTCTCCAACACCCAGTTCAAAGGTTCGCGCCGTGGCTTCTTGTGGCGACCCAGTTACTCGTTTGGCTCTCGTGCTGAAAACAGAGCACGACCCATCAAAGCTTCGGTTGGTGCACCACCATTTCCCCTGTTTAAGCCTCCCCAAGTTGAAGAAACATCTTCCGAGTTGGAGCCTGCAGATCCTGATTTCTACAAGATTGGTTATGTCCGAAGCATGCGAGCTTATGGAGTTCATTTTAAAGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAGCCTCTTCGCCGAGCAAGGGTTGTAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATACGCATTTGATTGCGAAGGCAACTTTTGGCAATTGTATGGCGACTTCTTACCGAGTGCAGATGAGTGCACTAGCTTACTTCTGGCTTCAGAGGAGGAACTTTTGGAGCTGCAGGATTCCGATCTTGCTTCCACTATTAGAAAACAGCAACAACGAGCCTTAGAATTCTGGGAGAGTAACTGGCACAGTGCTGCACCCCTTAAAATAAAGCGTCTTGCACATGATCCTCAAAGGTTCGCTTGGGCAGTAGGTATTGCACAGTCACGATGTATTAACATGCAAACGAGAATTGGTGCTCTAAATCAAGAAGCAAATATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAGCGCATTAGAAAGGGAGATGAGATGACAGTTAATTACATGAGTACGCAGAAGAACGACATGTTCATGCAAAGATATGGATTTTCATCACCTGTGAATCCTTGGGACGAGATCAAATTCTCAGGCAATGCACGTATTCATTTGGATTCCTTCGTGTCAATCTTCCATATATCTGGCCTTCCTGAAGAGTATTACCATAATAATTGTCTGTCAAATGCTGGGGATAGTTTTGTTGATGGAGCAGTCATAGCTGCAGCACGAACACTGCCAAGTTGGTCAGATGGGGATGTGCCTCCAATCCCTAGCGTGGAAAGAAAGGCTGCCAAGGAGTTGCAAGATGAATGTCAAAAGATGCTCGCAGCATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAGGTTCCATGACAGATGCTACGAGGACACTTGAAGCTGCAATAAAGTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTATCCAAGCATTGGAGATGTATCAAGAGCAAATACTGTTCTGA 1449 0.4355 MASSIPLYQPTNTLFSNTQFKGSRRGFLWRPSYSFGSRAENRARPIKASVGAPPFPLFKPPQVEETSSELEPADPDFYKIGYVRSMRAYGVHFKEGPDGFGVYASKDVEPLRRARVVMEIPLELMLTISKKLPWMFFPDIIPLDHPIFDIINSTNPETDWDLRLACLLLYAFDCEGNFWQLYGDFLPSADECTSLLLASEEELLELQDSDLASTIRKQQQRALEFWESNWHSAAPLKIKRLAHDPQRFAWAVGIAQSRCINMQTRIGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQRIRKGDEMTVNYMSTQKNDMFMQRYGFSSPVNPWDEIKFSGNARIHLDSFVSIFHISGLPEEYYHNNCLSNAGDSFVDGAVIAAARTLPSWSDGDVPPIPSVERKAAKELQDECQKMLAAFATTSKQDQKLLGSMTDATRTLEAAIKYRLHRKLFMEKVIQALEMYQEQILF* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0427 482 Pfam Rubisco LSMT substrate-binding 412 463 IPR015353 -
Gso9g0427 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 51 474 - -
Gso9g0427 482 SUPERFAMILY SET domain 98 338 IPR046341 -
Gso9g0427 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 475 IPR036464 -
Gso9g0427 482 CDD SET_LSMT 90 337 - -
Gso9g0427 482 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
Gso9g0427 482 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Gso9g0427 482 Gene3D - 379 480 IPR036464 -
Gso9g0427 482 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 51 474 - -
Gso9g0427 482 Pfam SET domain 99 322 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0427 Gso-Chr9 4259785 4267937 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso9g0427 SET 2.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0427 - - gmx:100786962 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1287 15 13209792 13216624 Gso9g0427 9 4259785 4267937 GST