Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0414 ATGGCATCTTCCCAGATTGAAATCGCTTCTTCATCGCCTTTTGGTTGCGCTTTGAGGGACCGCAATCACCGCGAAGCGTGCAGCAGGGAAAGCGGTAACGTGAAGAGCACGCATCATCATCATCATGCTAATTTCCAAAGAAACATGAAGAACTTTGTGATGGACCTTAACATGTGCATGGCTGTGTCTTCTGATTCGAAAGCAAATGAAAATGAAAACAACAGCAGCAGCAGCATCAACAACCACCGGAAGGCTCCAAAAAACAAACAGCTAGAGAGGCTTCTTATCACACGAGCCAACCCCTTTATTAACAACAGCAATGTCGCCAGCAATGAAACCTCGTTGGCCTCGTTGATCAGCCCGAGACACTCGGGCCTTCTCGATCGATGGGCCACGAGGCAGGCTTGCCAGATGGTGTCGAATTTGGAGAATGAGGCGGAGTTGTTGTCGATGGATGGCAATGACATGCTTCCAAGGACTTCTAGTTCCTCCGAAGAGGAGTCATCCTTCTCCTCGGAGACTCGAAATGGAGGTGGTGCCTCTTCTCTTGTTCAGATATGGGAGAAGAGGCTGAACCAATCCAGTGTCTCCAAACCCAACACGCCAAGGGAGAGGATTGGTTCGACCTCTTCTTCCATAAATGAGAATGCTAATGCTTTCTCTCCGGAGAATGCTAATGCTTTCTCTGGGGAGGAACAATGCTTTGATGGACCCTCAGGGAACGAAGAATCATTTACATCTTCTTCGTTCCCTGATTGGGAATCTAGTGATCAGTCCCTTTCGCCAAGCCGCAGGTCGGAGAGTGACAGGGTCAGGGTTGCTGACATCATAAAGAAACTAACTTCTACAAGCCAGAATCAGTGTCCAACACCTTCCTTTGCTGATGACAATGAACATGAAGGGTATGGTAGCAGCGTGACAGGTTCTCCTTGTAGAGAGCGTGAATGTGATCAACAACATTCGGAGCAGAACCGTAGAGTTAATTGTTCCTTGCGAATTAGAGGGCGCCGTGCGTACATTGATTTACTTGCACAGATGGAGAATGACAGGCTTGGGGAGCTTAACAACCTGGTAGAGCGTGGAGCAGTCTCCAAGTTCCCACAAAGAGGTCGCATTCAGGCAATGCTTCGACTTAGATTATTGCAACGTGGTGTGGCAGCTAATGATCAGCCCCGCCAGAAATCAACAGCATCTGAAGTAAACAACAGTCAGCCACATGGATATGCAATTATGCAATTAAGGGAAAGATTTAGCAGTGGAGCTGAACTTAGAACTCCAGTCCAGACCGAATTAGCTAACCCAAGAAGTCCTCAAAGGGAGACAGTAAACAAAACCACACAATTGGATAACTCTGTCACTACTGATCAACTCAGCAAAGACACAAGCAACAAGAAAGGTCACGGAAATGCCAATCATGCCACAGAATCCACACAAAAGTCAGCATCGCAGACTAGAATAGATCATAGCACAGAAGAAGCTCATCCAAGTTCAGATATCAAGGCTCCACAAAATGACTCACGAGAAACTACCGAGGCAACTACATCCACGATTGATTCAAATCTAAATGAGATGACCGCAGATAGGGAAGAGACGAGCAACCAACAGAATGCTATGGCTAAAAGCAGTAATGATGAGACAGTGAATGAGGAAGAGGAAAGTAACCAGCAGCATGCCGAAACCAGTTATGAGGAGACAATAGAAGAGGCAAGTAATCAGAACTATGCTGAAAGCAGTTATGATGATGAGATGGAGGAAGAGGTAGAGGAAATTGACCAGAATTGTTATGAAACTAATTATGACTGGATCAGTGAAATTTCTAGGCCTAGGAGCTACTGGGAAGAGTGCAGGCAAGCATGGTATAGAGAGATGCTAGAAACTGGTACTCAAAATGAGGATATACGGAGGCTTCTTGAAAGAAGAACAGTGTCAAGTTTCCTTTCTAGTGACTTCCGGGGTAGAATGGATAGATTGATGGAATCTCATAGGGGAACACAAACACATCTAGTGAATAGTCAAGACCGTGAGGAAGACAGCCAAGGATTGATGGCATTTTTACAAGAACGCTTGCATTCTACAAGAGCTTCTCAAGATGGAAGTAATGCGAGGGAGGAAGAAGATGAGAGTAGAAATCAGGATGAGGAAGAGGAGGATAATACAGATGAGCAGGAGCAGGAGCATGAAGAAGAGCATGAAAAGGAGAGCTTGATAAGTGGTTCATATCATGAAGTCGGCGATTATTCTAATCGATCCTCATCATGGAGTTACAGGGACAACGAAGCTGGTGATGATTTCGATAGAGTTGTTTCTTCATCCCCACAACCTTATCAATCTCAATCTTTCTATTCGGAATGTCGGCACTCTTCATCCACCAATCATCATTCAATTGAAATGGAACTCATATATGATTTGAGAGGGCATATGGAGCAACTTTATAGTGAGATATCTGAGCTAAGGAAATCAATAAAGGGCTGCTTGGAAATGCAGATGGAATTACAACAATCTATTAAACAAGAGGTTCAAACAGCTTCAGTCATGCAATGTAAACACACCATTACAGTTAAAAAAGAAGAAAAGAAGTCCAATGACACGACTTTAAAGAAAGGCAACTGCTGCATTTGCTATGAGATGAAAGTTGACTCAGTTTTGTACAGGTGTGGACACATGTGTACATGTCTCAAGTGTGCCAATGAGTTGCAATGGAACAGTGGAAAATGTCCTATATGTCGCGCTAAAATAGTGGATGTTGTTCACGTATATGTTGACAGTTAG 2769 0.4435 MASSQIEIASSSPFGCALRDRNHREACSRESGNVKSTHHHHHANFQRNMKNFVMDLNMCMAVSSDSKANENENNSSSSINNHRKAPKNKQLERLLITRANPFINNSNVASNETSLASLISPRHSGLLDRWATRQACQMVSNLENEAELLSMDGNDMLPRTSSSSEEESSFSSETRNGGGASSLVQIWEKRLNQSSVSKPNTPRERIGSTSSSINENANAFSPENANAFSGEEQCFDGPSGNEESFTSSSFPDWESSDQSLSPSRRSESDRVRVADIIKKLTSTSQNQCPTPSFADDNEHEGYGSSVTGSPCRERECDQQHSEQNRRVNCSLRIRGRRAYIDLLAQMENDRLGELNNLVERGAVSKFPQRGRIQAMLRLRLLQRGVAANDQPRQKSTASEVNNSQPHGYAIMQLRERFSSGAELRTPVQTELANPRSPQRETVNKTTQLDNSVTTDQLSKDTSNKKGHGNANHATESTQKSASQTRIDHSTEEAHPSSDIKAPQNDSRETTEATTSTIDSNLNEMTADREETSNQQNAMAKSSNDETVNEEEESNQQHAETSYEETIEEASNQNYAESSYDDEMEEEVEEIDQNCYETNYDWISEISRPRSYWEECRQAWYREMLETGTQNEDIRRLLERRTVSSFLSSDFRGRMDRLMESHRGTQTHLVNSQDREEDSQGLMAFLQERLHSTRASQDGSNAREEEDESRNQDEEEEDNTDEQEQEHEEEHEKESLISGSYHEVGDYSNRSSSWSYRDNEAGDDFDRVVSSSPQPYQSQSFYSECRHSSSTNHHSIEMELIYDLRGHMEQLYSEISELRKSIKGCLEMQMELQQSIKQEVQTASVMQCKHTITVKKEEKKSNDTTLKKGNCCICYEMKVDSVLYRCGHMCTCLKCANELQWNSGKCPICRAKIVDVVHVYVDS* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0414 922 MobiDBLite consensus disorder prediction 691 751 - -
Gso9g0414 922 MobiDBLite consensus disorder prediction 426 459 - -
Gso9g0414 922 Coils Coil 548 568 - -
Gso9g0414 922 MobiDBLite consensus disorder prediction 496 543 - -
Gso9g0414 922 Pfam Zinc finger, C3HC4 type (RING finger) 867 914 - -
Gso9g0414 922 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 851 921 IPR013083 -
Gso9g0414 922 MobiDBLite consensus disorder prediction 707 727 - -
Gso9g0414 922 MobiDBLite consensus disorder prediction 769 784 - -
Gso9g0414 922 MobiDBLite consensus disorder prediction 467 484 - -
Gso9g0414 922 ProSiteProfiles Zinc finger RING-type profile. 870 909 IPR001841 -
Gso9g0414 922 MobiDBLite consensus disorder prediction 426 580 - -
Gso9g0414 922 Coils Coil 709 729 - -
Gso9g0414 922 PANTHER BNAC05G24000D PROTEIN 1 922 - -
Gso9g0414 922 MobiDBLite consensus disorder prediction 65 84 - -
Gso9g0414 922 CDD mRING-HC-C3HC5_NEU1 869 909 - -
Gso9g0414 922 MobiDBLite consensus disorder prediction 544 564 - -
Gso9g0414 922 PANTHER BNAC05G24000D PROTEIN 1 922 - -
Gso9g0414 922 MobiDBLite consensus disorder prediction 155 228 - -
Gso9g0414 922 SMART ring_2 870 908 IPR001841 -
Gso9g0414 922 MobiDBLite consensus disorder prediction 65 88 - -
Gso9g0414 922 MobiDBLite consensus disorder prediction 153 324 - -
Gso9g0414 922 MobiDBLite consensus disorder prediction 239 262 - -
Gso9g0414 922 MobiDBLite consensus disorder prediction 278 293 - -
Gso9g0414 922 SUPERFAMILY RING/U-box 869 915 - -
Gso9g0414 922 MobiDBLite consensus disorder prediction 764 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0414 Gso-Chr9 4099318 4104519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0414 870 922 C3H Transcription Factor Family AT3G06140 39.623 1.20e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0414 - - gmx:100796661 1725.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1280 15 13072748 13078029 Gso9g0414 9 4099318 4104519 GST