Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0404 ATGTTTGGTCAGAGCATGGATTCTGCAAGGGATGCTGCGGGTGGTGTGGCAGGGACAGTGCTAATTCCCATGCGTTTTGTGTGGCCATATGGAGGAAGGAGTGTGTTTCTCAGTGGTTCTTTCACACGGTGGTTGGAGCTTCTACCGATGTCGCCAGTGGAAGGTTGTCCAACTGTGTTTCAAGTGATTTATAACTTGCCACCCGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAACATCAACCTTATGTACCTGGAGAATATGGGATAGTCAACACTGTCTTATTGGCCACTGATCCTAACTACATGCCTGTTTTACCTCCAGACGTTGCTTCTGGAAATAGCATGGATGTGGATAATGATGCTTTTCGCCGAATGCAGGCCCGGTTGACCGATGGTACTTTGAGTGAGGTGCTGCCAAGAATATCAGATACTGATGTACAAATATCCCGTCAGCGTATTTCTGCATTTCTATCTTCACACACCGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCTTTGGATGTTGATCTACCAGTGAAACAGGCATTTCATATATTGCATGAGCAGGGAGTTTTCATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCTTCGGATTTTATTTTAATTTTAAGAGAGCTGGGGAATCATGGATCCAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCAGCTTGGAAAGAAGGAAAATCGTATCTAAATAGACAGAACAATGGACATGGAACTGCATTTTCAAGATGTTTTATCCATGCAGGGCCATATGATAATCTGAAAGATATTGCCATGAAGATCTTGCAAAAGGAGGTTTCAACTGTTCCTATTATCCATTCATCTTCTGAAGATGCTTCATTTCCACAGTTACTACATCTTGCTTCACTTTCAGGAATACTTAAATGCATTTGTAGGTATTTTAGGCACTGCTCTAGTTCCTTGCCTGTACTTCAACTTCCAATCTGTGCAATACCTGTGGGCACGTGGGTGCCCAAAATTGGGGAATCAAATCGGCGGCCTCTAGCAATGTTGAGACCAACCGCTTCTCTTGCGTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGCTCAATACCAATAGTTGATGATAATGACTCATTATTGGATATATACTGTCGGAGTGACATAACAGCTTTGGCAAAGAACAGAGCATATACACATATTAATCTTGACGAAATGACTGTTCATCAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCCTATGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATCCTCTGCATAAAGTGATGGAACGCTTGGCAAATCCAGGTGTCAGGCGGCTTGTCATCGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGTGACATATTCAAGTTCTTCATTGGTGGTTAG 1482 0.4339 MFGQSMDSARDAAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTVFQVIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGEYGIVNTVLLATDPNYMPVLPPDVASGNSMDVDNDAFRRMQARLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGVFMAPLWDFCKGQFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKSYLNRQNNGHGTAFSRCFIHAGPYDNLKDIAMKILQKEVSTVPIIHSSSEDASFPQLLHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGESNRRPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFIGG* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0404 493 Gene3D - 149 331 IPR046342 -
Gso9g0404 493 SUPERFAMILY CBS-domain pair 357 492 IPR046342 -
Gso9g0404 493 SMART cbs_1 360 408 IPR000644 -
Gso9g0404 493 SMART cbs_1 442 491 IPR000644 -
Gso9g0404 493 SMART cbs_1 178 227 IPR000644 -
Gso9g0404 493 ProSiteProfiles CBS domain profile. 438 493 IPR000644 -
Gso9g0404 493 CDD E_set_AMPKbeta_like_N 23 101 - -
Gso9g0404 493 Gene3D Immunoglobulins 22 110 IPR013783 -
Gso9g0404 493 SUPERFAMILY E set domains 22 103 IPR014756 -
Gso9g0404 493 Pfam CBS domain 445 490 IPR000644 -
Gso9g0404 493 Pfam CBS domain 358 404 IPR000644 -
Gso9g0404 493 ProSiteProfiles CBS domain profile. 356 413 IPR000644 -
Gso9g0404 493 ProSiteProfiles CBS domain profile. 172 234 IPR000644 -
Gso9g0404 493 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 12 492 - -
Gso9g0404 493 Pfam Glycogen recognition site of AMP-activated protein kinase 22 104 IPR032640 -
Gso9g0404 493 Gene3D - 332 491 IPR046342 -
Gso9g0404 493 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 12 492 - -
Gso9g0404 493 SUPERFAMILY CBS-domain pair 159 329 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0404 Gso-Chr9 3966157 3975684 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0404 - - gmx:100781819 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1269 15 12929386 12941849 Gso9g0404 9 3966157 3975684 GST
Gso7g2111 7 44964423 44973017 Gso9g0404 9 3966157 3975684 PCT
Gso17g0193 17 1806720 1815145 Gso9g0404 9 3966157 3975684 PCT
Gso9g0404 9 3966157 3975684 Gso7g2111 7 44964423 44973017 PCT
Gso9g0404 9 3966157 3975684 Gso17g0193 17 1806720 1815145 PCT