Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0400 ATGGAAGATAGCATTGGAGGCAGTTCCTCAAACGACAACAACATCATCAAGGAACAGGACCGATTGCTGCCAATAGCCAATGTTGGTCGGCTCATGAAGCAGATTCTTCCTCAGAACGCGAAAATCTCGAAGGAGGCGAAAGAAACGATGCAGGAATGTGTGTCGGAGTTCATAAGCTTCGTGACCAGCGAGGCTTCGGAGAAGTGCAGGAAGGAGAGAAGGAAGACAGTGAATGGTGATGACATTTGTTGGGCCTTGGCAACACTAGGCTTTGATGACTATGCTGAACCAATGAGAAGGAAATCAAGGACGAAAATCCAGGAAGCATCAACCAACCAAAATGATTTGTGTTGA 354 0.4661 MEDSIGGSSSNDNNIIKEQDRLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRKSRTKIQEASTNQNDLC* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0400 117 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 102 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso9g0400 117 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Gso9g0400 117 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Gso9g0400 117 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Gso9g0400 117 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 8 102 - -
Gso9g0400 117 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Gso9g0400 117 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso9g0400 117 SUPERFAMILY Histone-fold 19 110 IPR009072 GO:0046982
Gso9g0400 117 Gene3D Histone, subunit A 11 115 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0400 Gso-Chr9 3889254 3891079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0400 15 100 CCAAT-HAP3 Transcription Factor Family AT2G47810 80.233 4.08e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso9g0400 CBFD_NFYB_HMF 2.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0400 K08065 - gmx:102663543 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1265 15 12838390 12839067 Gso9g0400 9 3889254 3891079 GST
Gso7g2106 7 44921483 44922485 Gso9g0400 9 3889254 3891079 PCT
Gso17g0197 17 1850307 1851514 Gso9g0400 9 3889254 3891079 PCT
Gso9g0400 9 3889254 3891079 Gso7g2106 7 44921483 44922485 PCT
Gso9g0400 9 3889254 3891079 Gso17g0197 17 1850307 1851514 PCT