Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0389 ATGCAGAACGAGGAAGGACAGATCACCGAGCTTTACATTCCTAGGAAGTGCTCTGCCACAAACCGATTGATTACCGCTAAGGACCATGCTTCGGTTCAGGTTAACATTGGGCATGTGGATGAGAATGGCGTCTACAATGGCCATTTCTCCACTTTTGCTCTCTGCGGCTTCATCCGTGCTCAGGGTGATGCTGACAGTGCCCTAGATCGCTTGTGGCAGAAGAAGAAAGTTGAAGTTAAGCAACAGTAG 249 0.49 MQNEEGQITELYIPRKCSATNRLITAKDHASVQVNIGHVDENGVYNGHFSTFALCGFIRAQGDADSALDRLWQKKKVEVKQQ* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0389 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
Gso9g0389 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Gso9g0389 82 Gene3D - 1 81 IPR038579 -
Gso9g0389 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Gso9g0389 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Gso9g0389 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0389 Gso-Chr9 3792310 3794061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0389 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 83.951 1.31e-51 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0389 K02971 - gmx:100499937 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2093 7 44827020 44828299 Gso9g0389 9 3792310 3794061 PCT
Gso9g0389 9 3792310 3794061 Gso7g2093 7 44827020 44828299 PCT