Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0361 ATGGCTGAAGATGGGAACAACAACGATGTACCCTTACACAAATTCAAAGACAGCAATCCAAACCCTGAAGAGTTCGATGCAAAGGGTTACAGCCTCAGCGGAAAAATCATGCTTTCAGCAATAATCCTTCTTTTCTTCGTCGTCGTTTTGATGTTGTGCCTTCATATCTACGCGCGCTGGTACCTCCGGCGTGCTCGCCGCCGCCAGCTCCGGCGCCAACGCGAGCTCCGCCGCACCCAGCTTGTCTTTTACAACGACGACGCCACCCCCGCAGCCGTGTCACGTGGCCTCGACGCCGCCATCCTTGCCACACTCCCCGTCTTCACCTTCGACCCGGAAAAAACCGGGCCGGAGTGCGCTGTTTGCTTGTCGGAGTTCGAACCCGGTGAAACGGGTCGGGTCTTGCCCAAATGTAATCACAGTTTCCACATAGAATGTATTGACATGTGGTTCCATTCTCATGACACGTGTCCTCTTTGTCGCGCCCCGGTTGAACGCGCGCCGGAACCGGAAGTTGTTGTTATAACGGTACCCGATCCGGTTTCCGAAACCGGTTCAGGCGAAAATGAGAACCGAACCGGTTCTTCTTCTTCTTCCTCTTCGGTTGGATTGAGTAAGCCTAAGCCTTCGTTGGTTGGTGTGACAATTGAGGTGCCTCCGAGGGACGAGAATTTTCAAAACGAGTTGCAACCGAGTTGCGACTCGTCCTCCTCGTTTCGGTCGCCGATGAGTCGCATGCTGTCGTTTACGAGGATGCTCGGCAGGGAAAAGAAGGGGAACGTGTCGCCGTCGTCGTGCGGCGGCGGCGGCGATTGTAGCTCCGCCGCGGAGCGAGGTGAGCGAGAGGAGACTCAGTGA 858 0.5571 MAEDGNNNDVPLHKFKDSNPNPEEFDAKGYSLSGKIMLSAIILLFFVVVLMLCLHIYARWYLRRARRRQLRRQRELRRTQLVFYNDDATPAAVSRGLDAAILATLPVFTFDPEKTGPECAVCLSEFEPGETGRVLPKCNHSFHIECIDMWFHSHDTCPLCRAPVERAPEPEVVVITVPDPVSETGSGENENRTGSSSSSSSVGLSKPKPSLVGVTIEVPPRDENFQNELQPSCDSSSSFRSPMSRMLSFTRMLGREKKGNVSPSSCGGGGDCSSAAERGEREETQ* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0361 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 27 203 - -
Gso9g0361 285 MobiDBLite consensus disorder prediction 182 206 - -
Gso9g0361 285 PANTHER RING-H2 FINGER PROTEIN ATL64 27 203 - -
Gso9g0361 285 SUPERFAMILY RING/U-box 118 166 - -
Gso9g0361 285 MobiDBLite consensus disorder prediction 1 20 - -
Gso9g0361 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 169 IPR013083 -
Gso9g0361 285 MobiDBLite consensus disorder prediction 177 285 - -
Gso9g0361 285 CDD RING-H2_EL5_like 118 161 - -
Gso9g0361 285 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Gso9g0361 285 SMART ring_2 119 160 IPR001841 -
Gso9g0361 285 MobiDBLite consensus disorder prediction 225 245 - -
Gso9g0361 285 Pfam Ring finger domain 118 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0361 Gso-Chr9 3550373 3551709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0361 27 263 Rapid Response to Elicitors AT3G16720 53.101 7.67e-69 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0361 - - gsj:114368044 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2076 7 44659540 44660579 Gso9g0361 9 3550373 3551709 PCT
Gso17g0227 17 2108951 2110006 Gso9g0361 9 3550373 3551709 PCT
Gso9g0361 9 3550373 3551709 Gso7g2076 7 44659540 44660579 PCT
Gso9g0361 9 3550373 3551709 Gso17g0227 17 2108951 2110006 PCT