Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0359 ATGGGTGGACATAACAATGACCATGAACAACAACGAAGCTTTGCCATTTTTATCATCTCTTCAATCCTTCTTGTGGCTACGATGCCTGTTGCAATGGCTTTTGGTTTAAACCCTAACCCTGTTGGATTAAATACTAACCCTAACCCTAACCCTAACCCTAACCCTGGAGGTGAAACTAAAGGAGAAACAGGGCATCAATCGAATGTCTTGAGCACTCACAGTAGTGGAATCACAATTTGCCAAGGAACAGAATACGAAGAAAAGTGCAAGCAAAGCCTTGGAAATTCACTTTTTGTAAACACAGACCCGAAGAAGCTCATCGAAACTCAGTTCAAAGTCGCAATTGGGGAACTTGTAGACAACATAATAAACAACTCCACCCTTTATAAACAGATTGTCACAGATGAGAGGACAAGACTAGCTATGGATGATTGTAAGGAAATTTTGGGCTATGCGGTTGATGCTATTATGAAATCCACAAGTCTATTGATTCAGTTTGATTTTAGCAAGTTGATGGAAATTGTTTATGACCTCAAGGTATGGCTCACGGGGAGTATTTCTCACCAATATACTTGCTTGGAAGGTCTTAAGAATATAGAAGAAAAAGCTAGTCAGAAAATGGCTATGGCTATGAGTTCCTCTTTGGAGCTTAGTAGCAATGCATTGGATATGACAGATACAATCTCTAGAATGCTCAACGGCTTTCGGCCAAAAATTTTCAATAGGAGACTTCTCTCTGAGGAAGCAACAGTTGTGGATGGTTTCCTTTCATGGGTGAATGAAGGACAAAGACGTTTTCTCCAGGTTGCACTTGGAAGTGTTAAGCCTAATGCAGTTGTGGCCCAAGATGGGTCTGGTCAATTTAAAACACTCACTGAAGCTCTTAAGACTGTTCCCGCTAACAATGATAAACCTTTTGTGATTCAAGTCAAGGCCGGTGTGTATAAGGAAATTGTAAAAGTGACCAATACCATGACCCATGTCACAATTATTGGAGAAGGTGCTACAAAGACTAAATTCACTGGCAGTTTAAACTTTGTTGATGGTTCCACAACTTTAGAGAGTGCTACCTTTGCTGTTAATGGTGCCAACTTCATGGCCAAGGATATTGGATTTGAAAACACAGCAGGGTCTTCGAAACAACAAGCAGTGGCACTTTTAGTAACAGCAGACCAAGCTGTGTTCTACAATTGTCAAATGGACGGGTTCCAAGACACTCTTTTTGCCCAATCTCAACGCCAATTCTACCGTGATTGCACCATCAGTGGCACCATTGACTTTATCTTTGGGGATGCCTTTGCAGTTTTCCAAAACTGCCAACTAATTGTGAGAAACCCCTTAAAGGGTGCACGATGCATGGTGACAGCTGGTGGCAGAGTCAAAGCTAATAGTGCTAGTGCCCTTGTGTTTCAAAGCTGCCACTTCACTGGAGAACCCGAATTGGCTTCTGCAGAACCTAAGCTAGCATTCCTTGGAAGGCCATGGATGCCATACTCTAAGGTGGTGATCATGGACTCTCAAATTGAAAATATCTTTTTACCTGAAGGGTACGAGGCATGGACAGCAAATGCAAACAAGGACACATGCACATATTATGAGTATAACAACAAGGGCCCTGGTGCTGACACCTCAAAAAGAGTTAAATGGCAAGGTGTTAAGGTCATAACCTCTACTGAAGCAAATAATTATTATCCTGGGAAGTTCTATGAACTTGCTAATTCAACTTCACGTGATGCATGGATTACTGATGCTGGGATACCCTACTCTCTTGGCCCTATGAGTGGCACAGTTCCTGCAGGGTTGGCCCAAAGTTCTACTACAGGATCGGCCCAGAGTCCTACAGGGTCAGCCCAGAGTCCTACAGGATCGGCCCAGAGTCCTACAGGGTCAGCCTAG 1896 0.4299 MGGHNNDHEQQRSFAIFIISSILLVATMPVAMAFGLNPNPVGLNTNPNPNPNPNPGGETKGETGHQSNVLSTHSSGITICQGTEYEEKCKQSLGNSLFVNTDPKKLIETQFKVAIGELVDNIINNSTLYKQIVTDERTRLAMDDCKEILGYAVDAIMKSTSLLIQFDFSKLMEIVYDLKVWLTGSISHQYTCLEGLKNIEEKASQKMAMAMSSSLELSSNALDMTDTISRMLNGFRPKIFNRRLLSEEATVVDGFLSWVNEGQRRFLQVALGSVKPNAVVAQDGSGQFKTLTEALKTVPANNDKPFVIQVKAGVYKEIVKVTNTMTHVTIIGEGATKTKFTGSLNFVDGSTTLESATFAVNGANFMAKDIGFENTAGSSKQQAVALLVTADQAVFYNCQMDGFQDTLFAQSQRQFYRDCTISGTIDFIFGDAFAVFQNCQLIVRNPLKGARCMVTAGGRVKANSASALVFQSCHFTGEPELASAEPKLAFLGRPWMPYSKVVIMDSQIENIFLPEGYEAWTANANKDTCTYYEYNNKGPGADTSKRVKWQGVKVITSTEANNYYPGKFYELANSTSRDAWITDAGIPYSLGPMSGTVPAGLAQSSTTGSAQSPTGSAQSPTGSAQSPTGSA* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0359 631 CDD PMEI-like_3 78 230 - -
Gso9g0359 631 MobiDBLite consensus disorder prediction 43 68 - -
Gso9g0359 631 SMART PMEI_2 72 224 IPR006501 GO:0004857
Gso9g0359 631 PANTHER PECTINESTERASE 9 595 - -
Gso9g0359 631 MobiDBLite consensus disorder prediction 597 631 - -
Gso9g0359 631 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 230 IPR035513 -
Gso9g0359 631 Gene3D - 274 593 IPR012334 -
Gso9g0359 631 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Gso9g0359 631 PANTHER PECTINESTERASE 9 595 - -
Gso9g0359 631 Pfam Plant invertase/pectin methylesterase inhibitor 78 224 IPR006501 GO:0004857
Gso9g0359 631 SUPERFAMILY Pectin lyase-like 275 570 IPR011050 -
Gso9g0359 631 Pfam Pectinesterase 277 568 IPR000070 GO:0030599|GO:0042545
Gso9g0359 631 MobiDBLite consensus disorder prediction 598 631 - -
Gso9g0359 631 TIGRFAM PME_inhib: pectinesterase inhibitor domain 78 227 IPR006501 GO:0004857
Gso9g0359 631 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 228 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0359 Gso-Chr9 3536749 3539518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0359 3 630 Carbohydrate Esterase AT3G05610 39.590 9.25e-160 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0359 K01051 - gmx:100785214 1180.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2075 7 44650040 44652727 Gso9g0359 9 3536749 3539518 PCT
Gso17g0228 17 2117724 2120475 Gso9g0359 9 3536749 3539518 PCT
Gso9g0359 9 3536749 3539518 Gso7g2075 7 44650040 44652727 PCT
Gso9g0359 9 3536749 3539518 Gso17g0228 17 2117724 2120475 PCT