Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0358 ATGGCTGATTACGATGGTAAAGAACAAAAAAGAAGGTTTGCCGTTCTTGGCATCTCTTCAATCCTTCTTGTGGCGATGGTGGCCGCGGTGGCAGTTACAATAAACCGTGGAGGTAATAAAGGAGAAGAAGGGGATGATGAATCTCGTGTCCAAACCGCTCAAAGGAACAACGTAGAAATGATTTGCAATTCAACAGAATACAAAGAAACCTGCAAGAAGAGCCTTGAAAAAGCGTCGTCGGACGAAAATGCGGACACAAAGGAGCTCATCAAGGCCGCGTTCAATGCCTCGGCCGTGGAACTTTTGAACCACATAAAGAACTCAACCCTTTACAAAGAGCTGGCCAAGGACAACATGACAAGACAAGCAATGGATATTTGCAAGGAAGTGTTTGATTATGCGATTGATGGTGTTCAGAAATCCATTGAGACATTGGACAAGTTTGAATTCATCAAGTTGAGTGAATATGTTTATGACCTAAAAGTTTGGCTCACGGGGAGTCTTTCTCACCAACAAACATGCTTGGATGGTTTTGAGAACACAAACACAAAAGCAGGTGAGAAAATGGCAAAGGCTATGAACGCATCTTTGGAGCTTAGTAGCAATGCATTGGACATGATCAATTTCATCTCTGGCTTAATCAAGGATCTTAACATAAGCTCACTTGTTGGTAATAATAGGAGACTTCTCAGCTCTAAGGAAGAAGCACTTGTAGATGGTTACCCTTCGTGGGTGAGTGAAGGGCAAAGACGTCTTCTAGGGCTTTCAAGTATTAAACCTAATGCAACTGTGGCAAAAGATGGGTCTGGCCAATTTGCAACACTCACTGATGCTCTTAAGACTGTTCCCCCTAAAAATGCTCAAGCTTTTGTGATCTATGTCAAGGCTGGTGTGTACAAAGAAAATGTGAATGTGGGCATGGACATGACCCATGTCACAGTTATTGGAGATGGTCCTAAAAAGACGAGGTTCAGTGGTAGTTTAAATTACAAAGATGGTGTCCAAACTTTCAACTCTGCTACCTTTGCTGTTAATGCTGCCAACTTCATGGCCAAGGATGTTGGATTTGAAAACACAGCAGGGGCTGAGAAACACCAAGCAGTGGCACTTCGAGTAACGGCAGACCAAGCTGTTTTTTATAACTGTCAAATGGACGCGTTCCAAGACACCCTTTACGTCCAATCTCAACGCCAATTCTACCGTGATTGCACTATCACTGGCACTATTGACTTTATCTTTGGAGATGCGTTTGGAGTGTTCCAAAACTGCAAACTAATTGTGAGACCACCTTTACCTAATCAACAATGCATGGTGACAGCTGGTGGCAGAAACAAAGTTGATAGCGCTAGTGGCCTTGTGTTCCAAAGTTGCCACTTCTCAGGGGAACCCCAAGTGGCTCAACTAACACGCAAGATAGCATACCTTGGAAGGCCATGGAGGCCATACTCAAAGGTGGTGATCATGGACTCTCAAATTGACAACATCTTTTTACCAGAAGGGTACATGGCATGGATGGGAAGTCAGTTCAAAGAGACATGTATATATTACGAGTATAATAACAAGGGCCCTGGTGCTGACACTTCGCAAAGAGTTAAATGGCCAGGTGTTAAGACCATAACATCTGTTGAAGCAACTAAATATTATCCGGGGAGGTTCTTTGAACTTGTTAATTCAACTGAACGTGATTCTTGGATTGTTGATGCTAGGGTACCTTACTCTCTTGGCTCTATGGCTGCTTAA 1740 0.4328 MADYDGKEQKRRFAVLGISSILLVAMVAAVAVTINRGGNKGEEGDDESRVQTAQRNNVEMICNSTEYKETCKKSLEKASSDENADTKELIKAAFNASAVELLNHIKNSTLYKELAKDNMTRQAMDICKEVFDYAIDGVQKSIETLDKFEFIKLSEYVYDLKVWLTGSLSHQQTCLDGFENTNTKAGEKMAKAMNASLELSSNALDMINFISGLIKDLNISSLVGNNRRLLSSKEEALVDGYPSWVSEGQRRLLGLSSIKPNATVAKDGSGQFATLTDALKTVPPKNAQAFVIYVKAGVYKENVNVGMDMTHVTVIGDGPKKTRFSGSLNYKDGVQTFNSATFAVNAANFMAKDVGFENTAGAEKHQAVALRVTADQAVFYNCQMDAFQDTLYVQSQRQFYRDCTITGTIDFIFGDAFGVFQNCKLIVRPPLPNQQCMVTAGGRNKVDSASGLVFQSCHFSGEPQVAQLTRKIAYLGRPWRPYSKVVIMDSQIDNIFLPEGYMAWMGSQFKETCIYYEYNNKGPGADTSQRVKWPGVKTITSVEATKYYPGRFFELVNSTERDSWIVDARVPYSLGSMAA* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0358 579 SMART PMEI_2 53 206 IPR006501 GO:0004857
Gso9g0358 579 PANTHER PECTINESTERASE 6 577 - -
Gso9g0358 579 SUPERFAMILY Pectin lyase-like 258 553 IPR011050 -
Gso9g0358 579 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Gso9g0358 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 208 IPR006501 GO:0004857
Gso9g0358 579 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Gso9g0358 579 CDD PMEI-like_3 61 208 - -
Gso9g0358 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 211 IPR035513 -
Gso9g0358 579 Pfam Plant invertase/pectin methylesterase inhibitor 57 206 IPR006501 GO:0004857
Gso9g0358 579 PANTHER PECTINESTERASE 6 577 - -
Gso9g0358 579 Gene3D - 258 577 IPR012334 -
Gso9g0358 579 Pfam Pectinesterase 261 553 IPR000070 GO:0030599|GO:0042545
Gso9g0358 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 212 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0358 Gso-Chr9 3529434 3532050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0358 5 578 Carbohydrate Esterase AT3G05610 44.655 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0358 K01051 - gmx:100784682 1147.5