Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0354 ATGTGTGGAGGTGCTATCATCTCAGACTTCATTGGTGTGAAGCGTGGCCGCAACCTCGCCGCGCAGGAACTATGGTCTGAGCTTGACCCTTTCTCTGACTTCCTTGGCTTCCATACCACCAATTCCAAAAACCAACCACCCCTGCAGAAAATTCCAGACAAAAAAGTGGTGTCATCATGTGAGAAGAAGAAGAAAAGCGTGGTGGGTGCAGAAAAGAAGAAGAGTGATAGTGGGCGAGCTCGTAAAAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCCGCGGAGATAAGGGACCCACACAAGGGTGTTCGTGTCTGGCTCGGCACCTTCCCCACCGCCGAAGAAGCCGCCCAAGCCTACGACGACGCCGCCATACGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCGGCCACCACCATTTCCGCCGCCGCCGCCGCTCCGCCACCCTCCAAAAAGCAACGCTGCCTCAGCCCTGACATCATCACTGAAGAAAGCAGCAGCAGCTCACATTCCACCACTGGATCCACCGGCGAAAGCGGCGGAGGAAACGACGAACTCGACCTGAAACAAATTGAATGGTTTCTAGGTTTGGAGAATGAGCTGCCTGTTAGCAACAACATTGGTGCTGAGTGGGACAACATGGATGACCTGTGGATGCTGGACGACGTCGTTGTGCCCAACCGTCACTTAATTTACTAG 714 0.5476 MCGGAIISDFIGVKRGRNLAAQELWSELDPFSDFLGFHTTNSKNQPPLQKIPDKKVVSSCEKKKKSVVGAEKKKSDSGRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAAQAYDDAAIRIRGDKAKLNFPATTISAAAAAPPPSKKQRCLSPDIITEESSSSSHSTTGSTGESGGGNDELDLKQIEWFLGLENELPVSNNIGAEWDNMDDLWMLDDVVVPNRHLIY* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0354 237 PANTHER EREBP TRANSCRIPTION FACTOR 1 158 - -
Gso9g0354 237 CDD AP2 85 140 IPR001471 GO:0003700|GO:0006355
Gso9g0354 237 PANTHER DNA-BINDING DOMAIN 1 158 IPR044808 GO:0003700|GO:0009873
Gso9g0354 237 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Gso9g0354 237 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Gso9g0354 237 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Gso9g0354 237 MobiDBLite consensus disorder prediction 166 185 - -
Gso9g0354 237 SUPERFAMILY DNA-binding domain 84 142 IPR016177 GO:0003677
Gso9g0354 237 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Gso9g0354 237 MobiDBLite consensus disorder prediction 166 189 - -
Gso9g0354 237 Gene3D AP2/ERF domain 84 143 IPR036955 GO:0003700|GO:0006355
Gso9g0354 237 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0354 Gso-Chr9 3440895 3443262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0354 1 229 AP2-EREBP Transcription Factor Family AT3G16770 44.186 4.39e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso9g0354 AP2 4.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0354 K09286 - gmx:100817253 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2070 7 44626860 44627817 Gso9g0354 9 3440895 3443262 PCT
Gso9g0354 9 3440895 3443262 Gso7g2070 7 44626860 44627817 PCT